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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr034468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 746aa MW: 81170.5 Da PI: 5.3384 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.3 | 1.7e-20 | 81 | 136 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Pbr034468.1 81 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 136 688999***********************************************999 PP | |||||||
2 | START | 217.1 | 5.8e-68 | 271 | 492 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 ela +a++el+++a+ +ep+W++s + +n+de++++f+++ + +++ea+r+s+vv+m++ +lve+l+d++ qW++ + +a tlev+ Pbr034468.1 271 ELAVAAMEELFRMAQMGEPLWMTSFdgttTLLNEDEYIRTFPRGIGpkqngFKTEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsRALTLEVL 367 57899********************999999************999********************************.******************* PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176 ssg galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d +++p ++++pSg+li++++ng+skvtwveh+++++r Pbr034468.1 368 SSGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDDLRPNPA---PRSCQRRPSGCLIQEMPNGYSKVTWVEHAEVDERG 462 ***********************************************************4...455789***************************** PP XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 177 phwllrslvksglaegaktwvatlqrqcek 206 +h+l+++lv+sg+a+gak+wvatl+rqce+ Pbr034468.1 463 VHNLYKQLVSSGHAFGAKRWVATLDRQCER 492 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 59 | 136 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.52E-20 | 68 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 78 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-20 | 79 | 142 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.59E-19 | 81 | 139 | No hit | No description |
Pfam | PF00046 | 4.2E-18 | 81 | 136 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 113 | 136 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.907 | 262 | 495 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.18E-35 | 264 | 494 | No hit | No description |
CDD | cd08875 | 1.17E-129 | 266 | 491 | No hit | No description |
SMART | SM00234 | 1.6E-65 | 271 | 492 | IPR002913 | START domain |
Pfam | PF01852 | 8.1E-58 | 272 | 492 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.6E-5 | 367 | 473 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.04E-25 | 511 | 737 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 746 aa Download sequence Send to blast |
MPSMMGSNGN ITGFASTSGL TLGQPNMMDA GNLHPLDMAP NTSESDIPRF RDDDFDSANK 60 SGSDNPEGGS GDDQENPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR KELSRELGLE 120 PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALGNASC PNCGGPTALG 180 EMSFDEHHLR LENARLREEI DSISAIAAKY VGKPLGTYPL MSSPVPSRGQ LDLGVGSFGG 240 QPGMGGEMYG AGDLLRSISA PSEADKPMII ELAVAAMEEL FRMAQMGEPL WMTSFDGTTT 300 LLNEDEYIRT FPRGIGPKQN GFKTEASRES AVVIMNHINL VEILMDVNQW STVFSGIVSR 360 ALTLEVLSSG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHADG TWAVVDVSLD 420 DLRPNPAPRS CQRRPSGCLI QEMPNGYSKV TWVEHAEVDE RGVHNLYKQL VSSGHAFGAK 480 RWVATLDRQC ERLASAMASN ITTGDIGVIT NQEGRKSMLK LAERMVISFC SGVSASTTHT 540 WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV LSAATSFWLP VPPKRVFEFL RDENSRSEWD 600 ILSNGGIVQE MAHIANGRDT GNCVSLLRSA NSSQSNMLIL QESCTDPTAS FVIYAPVDIV 660 AMNVVLNGSD PDYVALLPSG FAILPDGAGI GDSGSGGGSL LTVAFQILVD SVPTAKLSLG 720 SVATVNNLIA CTVERIKAAL SCDNA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr034468.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009342243.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A498H9E3 | 0.0 | A0A498H9E3_MALDO; Uncharacterized protein | ||||
STRING | XP_009342240.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.3 | 0.0 | homeodomain GLABROUS 2 |