PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr034242.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 510aa    MW: 56250.4 Da    PI: 6.6744
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr034242.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.82.5e-24165221259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +DgynWrKYGqK+vk+ + +rsYYrCt+++C +kk +e++++ ++v++i+Y+++H+h+
  Pbr034242.2 165 SDGYNWRKYGQKQVKSPQGSRSYYRCTYSECYAKK-IECCDHSGHVTDIVYKSQHTHD 221
                  7********************************98.*********************7 PP
2WRKY971.3e-30346402359
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++v+itY+g H+h+
  Pbr034242.2 346 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYRGVHDHP 402
                  9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-20162223IPR003657WRKY domain
SuperFamilySSF1182902.88E-19162223IPR003657WRKY domain
SMARTSM007742.4E-23164222IPR003657WRKY domain
PROSITE profilePS5081117.19165223IPR003657WRKY domain
PfamPF031063.4E-17166221IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-31329402IPR003657WRKY domain
PROSITE profilePS5081130.664339404IPR003657WRKY domain
SuperFamilySSF1182901.83E-26340403IPR003657WRKY domain
SMARTSM007743.0E-35344403IPR003657WRKY domain
PfamPF031061.7E-23346402IPR003657WRKY domain
PROSITE profilePS508119.936402430IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-5403430IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MAERHESSDA LPTEKLHPRK GEQEEGGDGD EDDDEERKQR LGEFQPGELK SSVSELRRTQ  60
LETLTAPSTQ EVSENDQFAG LQLESVSQSI DGAELQEQLG LSHQEILASV TNQDIQIQKQ  120
SQSQLTVCPT LFSELSPTSV TQSISSAPSP ILIEQRVPHG KTSASDGYNW RKYGQKQVKS  180
PQGSRSYYRC TYSECYAKKI ECCDHSGHVT DIVYKSQHTH DPPRKSICIK ENKLALSAEC  240
VRYSVVPAEH SCRTVNDSEV STSSKEPIQE TPSVPERKRQ STSDSDDNGD VKIKEENGDG  300
DEPEPKRRQV YLMKKSKSEY SASLSKPGKK PKFVVHAAGD VGISGDGYRW RKYGQKMVKG  360
NPHPRNYYRC TSAGCPVRKH IETAVDNTSA VIITYRGVHD HPVRKHIETA VDNTSAVIIT  420
YKGVHDHDMP VPKKRHGPPS APLVAAAAPA SMNNLHIKKT DTDPNQISST QWSVDTGGEL  480
TGEAFDLGGE KAMESARTLL SIGFEIKHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-23332401271WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr034242.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358442.10.0PREDICTED: probable WRKY transcription factor 32 isoform X2
RefseqXP_009358443.10.0PREDICTED: probable WRKY transcription factor 32 isoform X1
TrEMBLA0A498HXF70.0A0A498HXF7_MALDO; Uncharacterized protein
STRINGXP_008394322.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-116WRKY DNA-binding protein 32