PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr033988.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29552.2 Da PI: 8.1044 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +lv+ v ++G ++W+ Ia+ g++Rt+k+c++rw +yl Pbr033988.1 10 RGPWTEKEDFQLVCFVGLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 57 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Pbr033988.1 63 RGKMTPQEERLVLELHTKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.893 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-28 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-14 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-15 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-19 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.34E-10 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 27.054 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-24 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.38E-11 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MVQDQEQIRR GPWTEKEDFQ LVCFVGLFGD RRWDFIAKVS GLKRTGKSCR LRWVNYLHPG 60 LKRGKMTPQE ERLVLELHTK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQEKKRAVS 120 PSSSYSNCSS SSNITTAEGG ASFYDTGGKE TKASSGEKKT GGGDEAKEDE KREQREYSLD 180 DIWKDINLPE VNIIEPVYDA NLSSCPLMAS PTPWEYCSDL LWKMDEEEES KNMFLPTPSG 240 DHQFLSCYEY GKASLTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-27 | 10 | 112 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-26 | 7 | 112 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-26 | 7 | 112 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-27 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-27 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr033988.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009358321.1 | 0.0 | PREDICTED: transcription factor MYB59-like isoform X1 | ||||
Swissprot | Q9LX82 | 2e-88 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A498KFS3 | 1e-173 | A0A498KFS3_MALDO; Uncharacterized protein | ||||
STRING | XP_009358321.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 4e-88 | myb domain protein 48 |
Publications ? help Back to Top | |||
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