PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033866.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 435aa    MW: 48670.8 Da    PI: 5.2195
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033866.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-073103422254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp++e++++L +++gL+ +q+ +WF N+R +
  Pbr033866.1 310 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 342
                  69*****************************87 PP
2ELK28.82.8e-10263284122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  Pbr033866.1 263 ELKHELKQGYKEKIVDIREEIL 284
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-1796140IPR005540KNOX1
PfamPF037901.1E-1598137IPR005540KNOX1
SMARTSM012562.1E-22152207IPR005541KNOX2
PfamPF037911.6E-16157206IPR005541KNOX2
SMARTSM011886.1E-4263284IPR005539ELK domain
PfamPF037891.0E-6263284IPR005539ELK domain
PROSITE profilePS512139.969263283IPR005539ELK domain
PROSITE profilePS5007111.693283346IPR001356Homeobox domain
SuperFamilySSF466894.71E-16285348IPR009057Homeodomain-like
SMARTSM003896.5E-11285350IPR001356Homeobox domain
CDDcd000869.74E-12286347No hitNo description
Gene3DG3DSA:1.10.10.602.6E-25290349IPR009057Homeodomain-like
PfamPF059201.2E-17303342IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAFHHHHQQT PHEMAFHSFA EDQPPLSGAL TWLNNAAFRQ QNTSFSGLHD AGRNDDVVIS  60
PSGKSSSCSD RNRRDISGYD GGEEEEGEDE LECESARFKA DIVGHPLYEQ LVSAHVSCLR  120
IATPVDQLPR IDEKLVQSQR VVDNYSALRA NGDVGVMDEK ELDLFMTNYV LLLCSFKEQL  180
QQHVRVHAME AVMACWELDQ SLQSLTGVST GEGTGATMSD DDDQVDSDIN SYDGSLDGPD  240
TMGFGPLVPT ESERSLMERV RQELKHELKQ GYKEKIVDIR EEILRKRRAG KLPGDTTSVL  300
KSWWQSHSKW PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHTNISS TSVLKSKRKR  360
VSEPCCEAKS SIGSPANTFV EIESVTINVL RRCLLLLLVS AQPILSLVQL LLPSCCLLEP  420
SSAFMLAFVT IVVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339359RKRNWHTNISSTSVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033866.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341802.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
RefseqXP_009341836.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-160KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A498KJU70.0A0A498KJU7_MALDO; Uncharacterized protein
STRINGXP_009341800.10.0(Pyrus x bretschneideri)
STRINGXP_009341835.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-150KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]