PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033536.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 656aa    MW: 73093.7 Da    PI: 9.554
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033536.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.8e-07562611147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      Pbr033536.1 562 RRPFSVPEVEALVQAVEKLGTGRWRDVKLRAFestKHRTYVDLKDKWKTL 611
                      567888899*****************9888889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542369.29E-7369443IPR029071Ubiquitin-related domain
PROSITE profilePS5129413.782557616IPR017930Myb domain
SuperFamilySSF466891.7E-15559648IPR009057Homeodomain-like
SMARTSM007178.2E-7561614IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-10562612IPR009057Homeodomain-like
CDDcd116607.26E-16563613No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MVLQRRLDYG FSGYRMPEVP RASRSARGRG PIRKKLDANQ IHAFEILASV AGKLLQESKD  60
PLPTNDSCGK DPHFKFGGIT KSKQQDKGRL LKEEPCESGS CDEETFLYVH GLQERRKSYT  120
LNGVSHSQEN FSYEINSVSK SLDSERINFG KGLGAVDSRN SCGSHSNKVV NDSPLSEDSI  180
AEKPQGLLKR KQVTEPSQDT SIKEERTEFL GSSEDVMEME ERPHELVSSR HDVKTPFSGD  240
CKNHGPFLGH CANIRVVNRD DDKNTMTKEF EHPPEDGDKK ITNLVAPGHD GKIRQANCNW  300
RTCYAHQRSQ KIYPFKKRKF FNWRPLATSD RGCNCEGIFN TPDKILNGDN CCAAVRSSST  360
TGQQVPPKSN DCNVKLSIKS FKVPELFIEV PTTATVGSLK RTVMEAVTSI LGDGLHVGIL  420
VQGKKVRDDN KTLLQTGISQ DDKRHNLGFI LEPKRAKLTY PPCSEDPSLV SGRSQELTRH  480
SASLVSQPGT SDVSMSPPVL SLGGCIERDF KEVPSLASTS TDKTPPTSQA LVAVPPISMK  540
ALAVVPFHRK SGHQEYVQRR IRRPFSVPEV EALVQAVEKL GTGRWRDVKL RAFESTKHRT  600
YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLAAHA YWSQRHAKQQ VKAAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-515466521107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309318QKIYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033536.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341748.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A498K7F00.0A0A498K7F0_MALDO; Uncharacterized protein
STRINGXP_009341748.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-105TRF-like 2