PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr032759.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 468aa MW: 50744.6 Da PI: 4.409

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr032759.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.2	1.5e-34	318	415	3	100
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 a Ck+lrr+C++dCv++pyfp ++p++fa vh+++Gasnv k+l++lp++ r +a+++l+yeAe+r++d vyG+v++i++l++++++++ +la++++e Pbr032759.1 318 ATCKYLRRRCPSDCVFSPYFPPNNPQRFASVHRIYGASNVAKMLQQLPDHLRAEAADTLCYEAECRIQDLVYGCVKTISQLHHEIHNAECQLAKTRAE 415 78*******************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.157	315	416	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-36	318	413	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MNNFGSSGGM SSNAANTTGL TTNNIITNNL IQIFQQARQH GIFTNNNPFS YNFGTPGIQN 60 NVTNQQLIGN FSGTQMMSPN GRSELLGILN NFNGTGGFSS NGFNFNNETI NGLTNRVRNV 120 SLSGTTPPMA TLGGSSSLSP SAGIGTSTTT SSAYQFRKDF SNNREDQQQN VSVLPPPAEN 180 TDDNSTTTPT LVNKNNLSPG QEMDKALDDL MISNLFVDQQ NNYQPPPSSQ QQGGDQDQLP 240 PDFSSFLYPV EVPDATPNQM NPAVADQGLD TAVNKVSDPS PDQQQGGDQQ VLNPEFSGNV 300 FESEDYNMLF QTALPFPATC KYLRRRCPSD CVFSPYFPPN NPQRFASVHR IYGASNVAKM 360 LQQLPDHLRA EAADTLCYEA ECRIQDLVYG CVKTISQLHH EIHNAECQLA KTRAEIAFIN 420 SGGGGGGGQE HQVHQTQEVQ SDLSFFPDQT EVEATLFGSS SKATWFI*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MNNFGSSGGM SSNAANTTGL TTNNIITNNL IQIFQQARQH GIFTNNNPFS YNFGTPGIQN  60
NVTNQQLIGN FSGTQMMSPN GRSELLGILN NFNGTGGFSS NGFNFNNETI NGLTNRVRNV  120
SLSGTTPPMA TLGGSSSLSP SAGIGTSTTT SSAYQFRKDF SNNREDQQQN VSVLPPPAEN  180
TDDNSTTTPT LVNKNNLSPG QEMDKALDDL MISNLFVDQQ NNYQPPPSSQ QQGGDQDQLP  240
PDFSSFLYPV EVPDATPNQM NPAVADQGLD TAVNKVSDPS PDQQQGGDQQ VLNPEFSGNV  300
FESEDYNMLF QTALPFPATC KYLRRRCPSD CVFSPYFPPN NPQRFASVHR IYGASNVAKM  360
LQQLPDHLRA EAADTLCYEA ECRIQDLVYG CVKTISQLHH EIHNAECQLA KTRAEIAFIN  420
SGGGGGGGQE HQVHQTQEVQ SDLSFFPDQT EVEATLFGSS SKATWFI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-33	318	426	13	121	LOB family transfactor Ramosa2.1
5ly0_B	9e-33	318	426	13	121	LOB family transfactor Ramosa2.1

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00381	DAP	Transfer from AT3G26620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr032759.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017181693.1	0.0	putative two-component response regulator ARR13
TrEMBL	A0A498KU08	0.0	A0A498KU08_MALDO; Uncharacterized protein
STRING	XP_008378185.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	7e-47	LOB domain-containing protein 24