PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr032525.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 396aa MW: 44500.7 Da PI: 5.866

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr032525.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.9	2.4e-50	14	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkrknratksgyW 83 + pGfrFhPtdeelv +yLk+k +++ l++ e ik+vdiyk++PwdLp+ ++++ekewyf+++rd+ky++++r+nr+t +g+W Pbr032525.1 14 MLPGFRFHPTDEELVGFYLKRKFQQRVLPI-ELIKQVDIYKYDPWDLPTtvtelvscissvqaeLASTGEKEWYFYCPRDRKYKNSTRPNRVTGAGFW 110 579*************************.89***********55899999998777654445899*********************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+d++++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl Pbr032525.1 111 KATGTDRPIYSSeGSKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 156 *******956677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-53	13	187	IPR003441	NAC domain
PROSITE profile	PS51005	54.975	14	187	IPR003441	NAC domain
Pfam	PF02365	8.9E-25	16	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MEQKNEMEKV DDVMLPGFRF HPTDEELVGF YLKRKFQQRV LPIELIKQVD IYKYDPWDLP 60 TTVTELVSCI SSVQAELAST GEKEWYFYCP RDRKYKNSTR PNRVTGAGFW KATGTDRPIY 120 SSEGSKCIGL KKSLVFYRGR AAKGIKTDWM MHEFRLPSLS NSVPPKKLLD KSLPANDSWA 180 ICRIFKKTNS MAQRALSHSW DSQFPEPTAA GLFTQQFSSE DMSCTTDMGS TMQFWNNNDL 240 QQASNTNYSS FDTLPYKPIN PTVSKPSMFD GEFPNSFMFS PAELSGTMNP ALIDDLSNPA 300 GSIDFDGSQQ QFTGFSISLQ QQDQMQGNTG TSENEGGFRK NMSSSSNSTS QWGSSSIRSI 360 GFPFSLASDD ESWKPTLPSY SPPYPSSYST NKCYT*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MEQKNEMEKV DDVMLPGFRF HPTDEELVGF YLKRKFQQRV LPIELIKQVD IYKYDPWDLP  60
TTVTELVSCI SSVQAELAST GEKEWYFYCP RDRKYKNSTR PNRVTGAGFW KATGTDRPIY  120
SSEGSKCIGL KKSLVFYRGR AAKGIKTDWM MHEFRLPSLS NSVPPKKLLD KSLPANDSWA  180
ICRIFKKTNS MAQRALSHSW DSQFPEPTAA GLFTQQFSSE DMSCTTDMGS TMQFWNNNDL  240
QQASNTNYSS FDTLPYKPIN PTVSKPSMFD GEFPNSFMFS PAELSGTMNP ALIDDLSNPA  300
GSIDFDGSQQ QFTGFSISLQ QQDQMQGNTG TSENEGGFRK NMSSSSNSTS QWGSSSIRSI  360
GFPFSLASDD ESWKPTLPSY SPPYPSSYST NKCYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-50	16	190	17	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr032525.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009341008.1	0.0	PREDICTED: protein FEZ
Swissprot	Q9FIW5	1e-96	NAC94_ARATH; Putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	2e-95	FEZ_ARATH; Protein FEZ
TrEMBL	A0A498HG84	0.0	A0A498HG84_MALDO; Uncharacterized protein
TrEMBL	D9ZJ98	0.0	D9ZJ98_MALDO; NAC domain class transcription factor
STRING	XP_009341008.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	9e-99	NAC domain containing protein 94

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]