PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr032444.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WRKY | ||||||||
Protein Properties | Length: 313aa MW: 34961.9 Da PI: 10.0524 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 69.3 | 5.6e-22 | 250 | 301 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++p C +gCp++k+ver+ edp+++++tYeg+H+h+ Pbr032444.1 250 DDYSWRKYGQKPIKGSPYPS----C-VRGCPARKHVERCLEDPNMLVVTYEGNHQHP 301 99***************995....4.78****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.2E-16 | 204 | 246 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-23 | 235 | 302 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.769 | 243 | 303 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-19 | 246 | 302 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-24 | 248 | 302 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-17 | 250 | 301 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MERESGVCLS MNPGLDFRIH EVAQSSLKHA QRLFGCISEK KHKRSAQEVS LVAQDAVNEF 60 RKLLTLLDGS ILSNQKRIRR GPLPESRGIN QVELLESHQP CLGFRQLFSN THQSDHAAAN 120 VIRSNGFSMG RERKPSLALQ QGHCETSVVL PNNLIMGLNQ FSQKPSTSLI SMDGSSINTQ 180 TRMIHYSSSE LFASQDSDSM FSSKKKCEEA STRCLASTGG CHCSKRRKLR IKRRIRVPAV 240 SNKLADIPPD DYSWRKYGQK PIKGSPYPSC VRGCPARKHV ERCLEDPNML VVTYEGNHQH 300 PRFTFQAPSV AI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-15 | 236 | 300 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 229 | 235 | RIKRRIR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr032444.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009340917.1 | 0.0 | PREDICTED: probable WRKY transcription factor 7 | ||||
TrEMBL | A0A498JPD3 | 0.0 | A0A498JPD3_MALDO; Uncharacterized protein | ||||
STRING | XP_009340917.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14424 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 1e-42 | WRKY DNA-binding protein 21 |