PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032408.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 232aa    MW: 26837.2 Da    PI: 8.8965
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032408.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-1972125356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+ ++t++qle Le+ F ++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  Pbr032408.1  72 KKKRLTSDQLESLESSFLEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 125
                  56679************************************************9 PP
2HD-ZIP_I/II1185.1e-3872161291
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  kk+rl+++q+++LE+sF ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd +++e+++L++ev +L++ l
  Pbr032408.1  72 KKKRLTSDQLESLESSFLEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDVVSKEKQKLQEEVMKLKTIL 161
                  9****************9999*****************************************************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-1951129IPR009057Homeodomain-like
PROSITE profilePS5007116.81167127IPR001356Homeobox domain
SMARTSM003898.4E-1769131IPR001356Homeobox domain
PfamPF000461.6E-1672125IPR001356Homeobox domain
CDDcd000862.06E-1572128No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2074134IPR009057Homeodomain-like
PRINTSPR000314.0E-598107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000314.0E-5107123IPR000047Helix-turn-helix motif
PfamPF021838.5E-8127161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDWNTNLRHL VSRPEPSFGF LYNYNSYDHY PPGLEMKHQA MISKTSSHGG LVPGTMDRNN  60
HQSSYGCSSQ DKKKRLTSDQ LESLESSFLE EIKLDPDRKM KLSRELGLQP RQIAVWFQNR  120
RARWKAKQLE RLYDALKQEY DVVSKEKQKL QEEVMKLKTI LRDEVARKQV SIGYTEISGE  180
ETVESTSVSI RSANKARGTN QHQIAECNYL YNVEEYNPVS PPFWGNLPSY P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032408.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340973.11e-174PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-54ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A498ICZ71e-161A0A498ICZ7_MALDO; Uncharacterized protein
STRINGXP_009340973.11e-173(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-44homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]