PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr032279.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 459aa MW: 51962.4 Da PI: 10.3296 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 23.9 | 1.3e-07 | 37 | 89 | 16 | 69 |
FAR1 16 kskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 k++++++k+++++++r fvC+ +g++ ++k + + ++++++tr gC+a+l+++ Pbr032279.2 37 KKSNTHRKEDNTFKDRLFVCYAQGYHGPDKCD-ANVQHHHPKTRFGCQARLQIN 89 556677788999******************99.999999************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54928 | 9.25E-5 | 92 | 132 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 2.6E-20 | 97 | 129 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 11.708 | 106 | 233 | IPR000504 | RNA recognition motif domain |
SMART | SM00360 | 1.1E-8 | 107 | 229 | IPR000504 | RNA recognition motif domain |
Gene3D | G3DSA:3.30.70.330 | 2.6E-20 | 187 | 239 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF54928 | 4.21E-14 | 188 | 258 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Pfam | PF00076 | 3.1E-6 | 191 | 226 | IPR000504 | RNA recognition motif domain |
SuperFamily | SSF57756 | 2.56E-12 | 246 | 294 | IPR001878 | Zinc finger, CCHC-type |
SMART | SM00343 | 1.3E-4 | 255 | 271 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 2.4E-12 | 255 | 293 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 10.18 | 255 | 270 | IPR001878 | Zinc finger, CCHC-type |
Pfam | PF00098 | 1.8E-5 | 255 | 270 | IPR001878 | Zinc finger, CCHC-type |
Pfam | PF00098 | 1.1E-4 | 276 | 292 | IPR001878 | Zinc finger, CCHC-type |
SMART | SM00343 | 0.001 | 277 | 293 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 10.675 | 277 | 293 | IPR001878 | Zinc finger, CCHC-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MDITKNFMEY QTEAHRKLDF EGDISMNIFV EGKCSDKKSN THRKEDNTFK DRLFVCYAQG 60 YHGPDKCDAN VQHHHPKTRF GCQARLQINS LIPGTMPRHD DRNGGSRLYV GRLSSRTRSR 120 ELEDVFSRYG RFLGDNEPFA KPLFVLESVH FFYVCENASP LHVSLWFNFN DLVEGSLAFA 180 KPGGLGERVR DVDMKRDFAF VEFSDPRDAD DARYSLNGRD VDGSRIIVEF ARGAPRGPGG 240 SREYLGRGPP PGSGRCFNCG LDGHWARDCK AGDWKNKCYR CGERGHIERN CQNSPKKTTK 300 HGRSLSRSPS PRRGRSRSRS YSRDHSYSRS RSPVRGERSL ERRSRSPHDS RSPKRRRASP 360 PPSKGRKHDR TPEGRSPQER GSLSPQDRRS DDSRSPRAKS RSPINDVEGD SNGDRKHRSP 420 VEENSRSRSP SPVRRSDRSP VEDDGDIPGS PRGSESPA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably involved in intron recognition and spliceosome assembly. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr032279.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009357626.1 | 0.0 | PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform X1 | ||||
Refseq | XP_009357627.1 | 0.0 | PREDICTED: serine/arginine-rich splicing factor RS2Z33-like isoform X3 | ||||
Swissprot | Q9FYB7 | 2e-61 | RSZ32_ARATH; Serine/arginine-rich splicing factor RS2Z32 | ||||
TrEMBL | A0A498JK88 | 1e-161 | A0A498JK88_MALDO; Uncharacterized protein | ||||
STRING | XP_009357625.1 | 0.0 | (Pyrus x bretschneideri) |