PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr032235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 224aa MW: 25533.6 Da PI: 5.6793 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 132 | 4.3e-41 | 29 | 155 | 1 | 126 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lp+Gf F+Pt eel+ +yL+ k++g++ +++vi+e++i+++eP+dLp+ ++++++ewyfFs+ +k++ +++++ratk+g+Wk tg++k+v+++ Pbr032235.1 29 LPVGFGFRPTGEELIGYYLQMKLKGTDYVFSDVIPEINICDHEPRDLPElsPIDSTNQEWYFFSTYKKNS--KNQTERATKEGFWKITGTQKPVKTEd 124 799***************************9****************95346777889******998865..569********************986 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmhey 126 +++++g k++L+fy+gr ++++ktdWvmhey Pbr032235.1 125 QRTVIGEKRILTFYQGRVRNSQKTDWVMHEY 155 66779************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-42 | 22 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.146 | 29 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-23 | 30 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAANGIHFTR VGDMVFPVGF HWTRVGDVLP VGFGFRPTGE ELIGYYLQMK LKGTDYVFSD 60 VIPEINICDH EPRDLPELSP IDSTNQEWYF FSTYKKNSKN QTERATKEGF WKITGTQKPV 120 KTEDQRTVIG EKRILTFYQG RVRNSQKTDW VMHEYIPQTN PNDNQRDLVV CCVKKKSGEN 180 VDAANCHEGE SSTNNNASDF GNQQLLAPRM DIEEVRMLNT NAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-22 | 29 | 176 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-22 | 29 | 176 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-22 | 29 | 176 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-22 | 29 | 176 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-22 | 29 | 176 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-22 | 29 | 176 | 17 | 165 | NAC domain-containing protein 19 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr032235.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018499420.1 | 1e-162 | PREDICTED: NAC domain-containing protein 14-like | ||||
TrEMBL | A0A498KJI1 | 1e-113 | A0A498KJI1_MALDO; Uncharacterized protein | ||||
STRING | XP_009340837.1 | 1e-147 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13478 | 5 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 1e-37 | NAC 014 |