PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032232.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 420aa    MW: 47954.8 Da    PI: 5.8867
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032232.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.98.2e-36301631127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                  lp+Gf F+Pt eel+ +yL  k++ k       +++vi+e+ +i+++ePwdL++   ++++++ewyfFs+ +k++  +++  r+tk+g+Wk tg++k+
  Pbr032232.1  30 LPVGFGFRPTGEELIGYYLPMKLQMKLkgtdYAFSDVIPEInNICSHEPWDLHRlsPIDSTNQEWYFFSTYKKNS--KNQIPRTTKEGFWKITGTQKP 125
                  799***************9888776655555777889****99*********84346777889******998865..56999**************** PP

          NAM  92 vlsk.kgelvglkktLvfykgr.apkgektdWvmheyr 127
                  v+++ +++++g k++L+fy+gr +++++ktdWvmhey 
  Pbr032232.1 126 VKTEdQRTVIGEKRILTFYQGRvHKDPKKTDWVMHEYY 163
                  **98666779**********96256689*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3626184IPR003441NAC domain
PROSITE profilePS5100541.29230184IPR003441NAC domain
PfamPF023651.7E-2031163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAANGIHFTR VGDKEFPVGF HWTRVGDKVL PVGFGFRPTG EELIGYYLPM KLQMKLKGTD  60
YAFSDVIPEI NNICSHEPWD LHRLSPIDST NQEWYFFSTY KKNSKNQIPR TTKEGFWKIT  120
GTQKPVKTED QRTVIGEKRI LTFYQGRVHK DPKKTDWVMH EYYIPQTNPN VNQRDLVVCC  180
VKKKSGENVD AANCHEGESS TNNNASDFQN QQLLAPRMDI EEEHTPQQQS MDIFELTKCR  240
MLGDHYHEMP SAFGANERDE TIEVSIHSIM DWDAVESTFD WDAVESTFDW DAIRSEPPVD  300
SRHSSRQKDL KLYQIQVASS VNLVPKPQTD RIQVVTDEHS GTHQRTKSDK EAEVAQGNNV  360
EKGLKQTQNA TTTGNWKGCF ISWEASPPLT SPASVYLFNM VLGVIMFCIF AWEAVLYGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-173018417165NO APICAL MERISTEM PROTEIN
1ut4_B2e-173018417165NO APICAL MERISTEM PROTEIN
1ut7_A2e-173018417165NO APICAL MERISTEM PROTEIN
1ut7_B2e-173018417165NO APICAL MERISTEM PROTEIN
3swm_A3e-173018420168NAC domain-containing protein 19
3swm_B3e-173018420168NAC domain-containing protein 19
3swm_C3e-173018420168NAC domain-containing protein 19
3swm_D3e-173018420168NAC domain-containing protein 19
3swp_A3e-173018420168NAC domain-containing protein 19
3swp_B3e-173018420168NAC domain-containing protein 19
3swp_C3e-173018420168NAC domain-containing protein 19
3swp_D3e-173018420168NAC domain-containing protein 19
4dul_A2e-173018417165NAC domain-containing protein 19
4dul_B2e-173018417165NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032232.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340834.21e-161PREDICTED: uncharacterized protein LOC103932908
TrEMBLA0A498KGZ21e-132A0A498KGZ2_MALDO; Uncharacterized protein
STRINGXP_009340837.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13478522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.26e-30NAC 014