PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr032225.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 203aa MW: 23232.4 Da PI: 9.2199 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128.3 | 5.9e-40 | 20 | 147 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 pGf F+Ptde lv++yLk+k+eg++ ++ +vi+e+d++k+eP dLp + + kew+fFs+ d ky +g+r nr+t++g+ k tgkd+e+ ++ ++ Pbr032225.1 20 LPGFGFSPTDELLVSYYLKNKIEGTDSHFRHVIPEIDVCKYEPCDLPaFFPEVHGKEWFFFSRLDYKY-NGTRCNRVTDQGFYKITGKDREIRAEeSK 116 59***************************999***************545556889***********9.79**********************98566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g k++L+fy+ r pk++kt+Wv+hey+l Pbr032225.1 117 AVIGKKRILTFYERRLPKSKKTNWVVHEYNL 147 779**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-43 | 15 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.84 | 19 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-20 | 21 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MSSSVAPEEG DAVRVNVSRL PGFGFSPTDE LLVSYYLKNK IEGTDSHFRH VIPEIDVCKY 60 EPCDLPAFFP EVHGKEWFFF SRLDYKYNGT RCNRVTDQGF YKITGKDREI RAEESKAVIG 120 KKRILTFYER RLPKSKKTNW VVHEYNLTET KVSSKPTKQM NFVLWRIKNM SGSYKKPKGD 180 PIHGELADTG ATSEDYQAAV VM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-31 | 2 | 176 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-31 | 2 | 176 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-31 | 2 | 176 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-31 | 2 | 176 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-31 | 2 | 176 | 1 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-31 | 2 | 176 | 1 | 171 | NAC domain-containing protein 19 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr032225.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018499419.1 | 1e-149 | PREDICTED: LOW QUALITY PROTEIN: protein NTM1-like 9 | ||||
TrEMBL | A0A498KME3 | 1e-125 | A0A498KME3_MALDO; Uncharacterized protein | ||||
STRING | XP_008354053.1 | 1e-141 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13710 | 5 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-40 | NAC transcription factor-like 9 |