PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032224.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 348aa    MW: 38759.8 Da    PI: 4.4495
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032224.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.41.6e-37171433127
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                  pGfrFhP+de lv++yLk+k++g++ ++  vi+e+d++k+ePw++p    + +ekew+fFs+ + k   ++r+ rat++g+ k+tg ++e+ ++ +++
  Pbr032224.1  17 PGFRFHPSDESLVSYYLKNKIQGTDSHFRYVIPEIDVCKYEPWEIPaFFPEVHEKEWFFFSPPKYKDIDKTRRDRATDQGFYKSTGDEREIRAEeSQA 114
                  9************************999999***************545556899*************************************985566 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyr 127
                  ++g k+ L f +gr  k++ktdWv+he++
  Pbr032224.1 115 VIGKKRFLPFREGRGLKAKKTDWVIHEFT 143
                  699************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3814154IPR003441NAC domain
PROSITE profilePS5100539.92415194IPR003441NAC domain
PfamPF023656.3E-1917143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MTTEEGDVVH VNVIPLPGFR FHPSDESLVS YYLKNKIQGT DSHFRYVIPE IDVCKYEPWE  60
IPAFFPEVHE KEWFFFSPPK YKDIDKTRRD RATDQGFYKS TGDEREIRAE ESQAVIGKKR  120
FLPFREGRGL KAKKTDWVIH EFTETEVGPF VLCLLKNRSP TYKKPKGDPI CGKLADSGAN  180
SKDNQAAVCD VIPKPVEHLG YKGRGDVNSS ESPDGSHLID SNNILSFDDE TGDGKFPDLD  240
DPAASDRFLG LLAENEEILN SPPQTPHQTP QDYLSSTFLS SGNVQLGAVL QANGTSDDCN  300
TIQYNGTSDD SHLIDSNNIL SFDDETGDGE FPDLDDPAAS ARFLEVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-2311644171NO APICAL MERISTEM PROTEIN
1ut4_B3e-2311644171NO APICAL MERISTEM PROTEIN
1ut7_A3e-2311644171NO APICAL MERISTEM PROTEIN
1ut7_B3e-2311644171NO APICAL MERISTEM PROTEIN
3swm_A3e-2311647174NAC domain-containing protein 19
3swm_B3e-2311647174NAC domain-containing protein 19
3swm_C3e-2311647174NAC domain-containing protein 19
3swm_D3e-2311647174NAC domain-containing protein 19
3swp_A3e-2311647174NAC domain-containing protein 19
3swp_B3e-2311647174NAC domain-containing protein 19
3swp_C3e-2311647174NAC domain-containing protein 19
3swp_D3e-2311647174NAC domain-containing protein 19
4dul_A3e-2311644171NAC domain-containing protein 19
4dul_B3e-2311644171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032224.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499414.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A498KPH00.0A0A498KPH0_MALDO; Uncharacterized protein
STRINGXP_009340862.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.39e-37NAC transcription factor-like 9