PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032223.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 250aa    MW: 28357.8 Da    PI: 5.262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032223.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.15.1e-38151451127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                  l pGfrF Ptd+ lv++yLk+k++g++ ++ +vi+e+d++k+ePwd+p    + +ekew+fFs+ + k  +++r+ r+t +g+ k+tg ++e+ ++ +
  Pbr032223.1  15 LLPGFRFCPTDKLLVCYYLKNKIQGTDSHFRSVIPEIDVCKYEPWDIPaFFPEVHEKEWFFFSRPKYKDINKTRRDRTTYQGFYKSTGGEREIRAEeS 112
                  579***************************999***************545556899*************************************9855 PP

          NAM  97 gelvglkktLvfykg..rapkgektdWvmheyr 127
                  ++++g k+ L+f++g  r pk++ktdWv+he++
  Pbr032223.1 113 QAVIGKKRFLTFHEGraRGPKAKKTDWVIHEFT 145
                  6679*********773367999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3811156IPR003441NAC domain
PROSITE profilePS5100539.40215179IPR003441NAC domain
PfamPF023651.0E-1817145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MTTEEGDAVH VNVILLPGFR FCPTDKLLVC YYLKNKIQGT DSHFRSVIPE IDVCKYEPWD  60
IPAFFPEVHE KEWFFFSRPK YKDINKTRRD RTTYQGFYKS TGGEREIRAE ESQAVIGKKR  120
FLTFHEGRAR GPKAKKTDWV IHEFTEIEVG SFVLCLLKNR SPSYKKPKGD PIYGKLADSG  180
ANSEDNQAAG SDVIPEPVEH LGYKERGDGS CLIDCNNILS FDDDDDETGD GKFPDLDDPA  240
ASARFLEVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-2411664171NO APICAL MERISTEM PROTEIN
1ut4_B5e-2411664171NO APICAL MERISTEM PROTEIN
1ut7_A5e-2411664171NO APICAL MERISTEM PROTEIN
1ut7_B5e-2411664171NO APICAL MERISTEM PROTEIN
3swm_A6e-2411667174NAC domain-containing protein 19
3swm_B6e-2411667174NAC domain-containing protein 19
3swm_C6e-2411667174NAC domain-containing protein 19
3swm_D6e-2411667174NAC domain-containing protein 19
3swp_A6e-2411667174NAC domain-containing protein 19
3swp_B6e-2411667174NAC domain-containing protein 19
3swp_C6e-2411667174NAC domain-containing protein 19
3swp_D6e-2411667174NAC domain-containing protein 19
4dul_A5e-2411664171NAC domain-containing protein 19
4dul_B5e-2411664171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032223.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499418.10.0PREDICTED: NAC domain-containing protein 30-like
TrEMBLA0A498KJE21e-142A0A498KJE2_MALDO; Uncharacterized protein
STRINGXP_008361442.11e-162(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-32NAC transcription factor-like 9