PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr032222.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 519aa MW: 58712.6 Da PI: 4.3847

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr032222.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.7	4.3e-31	23	149	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 pGf F Ptde l+ +yLk+k+eg++ ++ ++++e+d+ k+eP d+p + +e+ew fF++ + k ++ r+ r t++g+ k tg ++e+ ++ +++ Pbr032222.1 23 PGFGFCPTDELLIRYYLKNKIEGTDSHFRRIFPEIDLSKYEPGDIPaFVPEVNENEWVFFTRPKYKDTRCPRRDRLTHQGFYKITGDEREIRAEeSKA 120 9*************************999***********545566889*********************************985666 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyr 127 ++g k +L+f++gr pk++++dWv+hey Pbr032222.1 121 AIGKKIILTFHEGRGPKAKNSDWVIHEYY 149 79************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-35	18	173	IPR003441	NAC domain
PROSITE profile	PS51005	38.501	21	173	IPR003441	NAC domain
Pfam	PF02365	1.3E-14	23	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MGSSSSITPE EGEAVRVNVS RLPGFGFCPT DELLIRYYLK NKIEGTDSHF RRIFPEIDLS 60 KYEPGDIPAF VPEVNENEWV FFTRPKYKDT RCPRRDRLTH QGFYKITGDE REIRAEESKA 120 AIGKKIILTF HEGRGPKAKN SDWVIHEYYC TKTEVGSKPT KQMDFVLCRL KNKSPSYKKP 180 KGDPTRGELP DSGANSEDDQ AAGGDVIPGP VEHLGYKERG DVNSSESPDG SCLIDCINIL 240 SFDDGDDETG DGKFPDLDDP AASARFLELR AEMEEILNSP PQTPHQTPQD YLSSTFLSSR 300 NIQLGAVLQA NGTSDDCNTI QSPFGDNNYS YTDKNDISTC DEGEPHSFTV SDFENKVVED 360 MSQELCVQPQ KDMDLLQLHV AQQSPTYTKL EDFMDANIFY DECIEWQPQI GDEYSHVNCK 420 DNISTNDENE PVSCNAFDLE NQYTDNMILE PCVQPEKYLR SVLHADICDN GYNNWQPTCW 480 DKDSYLTEKK NISTNDKDKQ YGSIAYNFDN QATNKRKR*

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MGSSSSITPE EGEAVRVNVS RLPGFGFCPT DELLIRYYLK NKIEGTDSHF RRIFPEIDLS  60
KYEPGDIPAF VPEVNENEWV FFTRPKYKDT RCPRRDRLTH QGFYKITGDE REIRAEESKA  120
AIGKKIILTF HEGRGPKAKN SDWVIHEYYC TKTEVGSKPT KQMDFVLCRL KNKSPSYKKP  180
KGDPTRGELP DSGANSEDDQ AAGGDVIPGP VEHLGYKERG DVNSSESPDG SCLIDCINIL  240
SFDDGDDETG DGKFPDLDDP AASARFLELR AEMEEILNSP PQTPHQTPQD YLSSTFLSSR  300
NIQLGAVLQA NGTSDDCNTI QSPFGDNNYS YTDKNDISTC DEGEPHSFTV SDFENKVVED  360
MSQELCVQPQ KDMDLLQLHV AQQSPTYTKL EDFMDANIFY DECIEWQPQI GDEYSHVNCK  420
DNISTNDENE PVSCNAFDLE NQYTDNMILE PCVQPEKYLR SVLHADICDN GYNNWQPTCW  480
DKDSYLTEKK NISTNDKDKQ YGSIAYNFDN QATNKRKR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-20	17	179	13	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-20	17	179	13	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-20	17	179	13	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-20	17	179	13	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-20	18	179	17	174	NAC domain-containing protein 19
3swm_B	2e-20	18	179	17	174	NAC domain-containing protein 19
3swm_C	2e-20	18	179	17	174	NAC domain-containing protein 19
3swm_D	2e-20	18	179	17	174	NAC domain-containing protein 19
3swp_A	2e-20	18	179	17	174	NAC domain-containing protein 19
3swp_B	2e-20	18	179	17	174	NAC domain-containing protein 19
3swp_C	2e-20	18	179	17	174	NAC domain-containing protein 19
3swp_D	2e-20	18	179	17	174	NAC domain-containing protein 19
4dul_A	2e-20	17	179	13	171	NAC domain-containing protein 19
4dul_B	2e-20	17	179	13	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr032222.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008362662.3	0.0	NAC domain-containing protein 62-like
TrEMBL	A0A498KJE2	0.0	A0A498KJE2_MALDO; Uncharacterized protein
STRING	XP_009340831.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF38064	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	7e-30	TCV-interacting protein