PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr032222.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 519aa MW: 58712.6 Da PI: 4.3847 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.7 | 4.3e-31 | 23 | 149 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 pGf F Ptde l+ +yLk+k+eg++ ++ ++++e+d+ k+eP d+p + +e+ew fF++ + k ++ r+ r t++g+ k tg ++e+ ++ +++ Pbr032222.1 23 PGFGFCPTDELLIRYYLKNKIEGTDSHFRRIFPEIDLSKYEPGDIPaFVPEVNENEWVFFTRPKYKDTRCPRRDRLTHQGFYKITGDEREIRAEeSKA 120 9***************************999***************545566889*************************************985666 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyr 127 ++g k +L+f++gr pk++++dWv+hey Pbr032222.1 121 AIGKKIILTFHEGRGPKAKNSDWVIHEYY 149 79**************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-35 | 18 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.501 | 21 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-14 | 23 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 519 aa Download sequence Send to blast |
MGSSSSITPE EGEAVRVNVS RLPGFGFCPT DELLIRYYLK NKIEGTDSHF RRIFPEIDLS 60 KYEPGDIPAF VPEVNENEWV FFTRPKYKDT RCPRRDRLTH QGFYKITGDE REIRAEESKA 120 AIGKKIILTF HEGRGPKAKN SDWVIHEYYC TKTEVGSKPT KQMDFVLCRL KNKSPSYKKP 180 KGDPTRGELP DSGANSEDDQ AAGGDVIPGP VEHLGYKERG DVNSSESPDG SCLIDCINIL 240 SFDDGDDETG DGKFPDLDDP AASARFLELR AEMEEILNSP PQTPHQTPQD YLSSTFLSSR 300 NIQLGAVLQA NGTSDDCNTI QSPFGDNNYS YTDKNDISTC DEGEPHSFTV SDFENKVVED 360 MSQELCVQPQ KDMDLLQLHV AQQSPTYTKL EDFMDANIFY DECIEWQPQI GDEYSHVNCK 420 DNISTNDENE PVSCNAFDLE NQYTDNMILE PCVQPEKYLR SVLHADICDN GYNNWQPTCW 480 DKDSYLTEKK NISTNDKDKQ YGSIAYNFDN QATNKRKR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-20 | 17 | 179 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-20 | 17 | 179 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-20 | 17 | 179 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-20 | 17 | 179 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-20 | 18 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-20 | 18 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-20 | 18 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-20 | 18 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-20 | 18 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-20 | 18 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-20 | 18 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-20 | 18 | 179 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-20 | 17 | 179 | 13 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-20 | 17 | 179 | 13 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr032222.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008362662.3 | 0.0 | NAC domain-containing protein 62-like | ||||
TrEMBL | A0A498KJE2 | 0.0 | A0A498KJE2_MALDO; Uncharacterized protein | ||||
STRING | XP_009340831.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF38064 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G24590.2 | 7e-30 | TCV-interacting protein |