PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032221.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 529aa    MW: 59476.5 Da    PI: 4.9429
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032221.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.62.4e-36231502127
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                   pGfrF P+de lv++yLk+k+eg++ ++ +vi+e+d+ k+eP+d+p    + +ekew+fF++ + k ++++r+ r t++gy k tg ++ + ++ ++
  Pbr032221.1  23 LPGFRFCPSDELLVSYYLKNKIEGTDSHFRHVIPEIDVWKFEPRDIPaFFPEVHEKEWFFFTRPKYKDTNSTRRDRLTHKGYYKITGDERVIRAEeSK 120
                  59***************************999***************545556899************************************998566 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyr 127
                  +++g k +L+f++grapk++k+dWv+hey 
  Pbr032221.1 121 AVIGKKIILTFHEGRAPKAKKSDWVIHEYY 150
                  6799999**********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-4218173IPR003441NAC domain
PROSITE profilePS5100542.64222174IPR003441NAC domain
PfamPF023651.1E-1724149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSSSSSSIAP EEGDAVRVNV SRLPGFRFCP SDELLVSYYL KNKIEGTDSH FRHVIPEIDV  60
WKFEPRDIPA FFPEVHEKEW FFFTRPKYKD TNSTRRDRLT HKGYYKITGD ERVIRAEESK  120
AVIGKKIILT FHEGRAPKAK KSDWVIHEYY CTKTEVGSKP TKQMDLVLCR LKNRSPSYKK  180
PKGDPTRGES PDSGANPEDD QAVASDVIAG PVEHLGCKEI GDVNSSESQD GSCPINWKDI  240
LTFVYGDDET GGWKVSDVDD PAASDMFEEF CSALEEIPNS TSQLPQPPQL LQAPEPHQPP  300
HPHQTQDYCP STHQPPEYII STNDPNEPVS KPNGVQDLAT DEIIPEDCFH PDEFMGLPFD  360
PSQDYLLPSP MNMELGDGVH PNNCIGEIVF NHHPFVSIHW ELPREESDCK AVSQDKVREA  420
AELHCSSSAL EENKNRVFEA YSFEAGIDRV LSLKHLLKTT YQVSPMGNGI VTSITSSSSS  480
LILRLSFHSR LFWKWRYTGS AATWLLVSQI YYNNQTLNGD VLVVGIEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-2751801171NO APICAL MERISTEM PROTEIN
1ut4_B8e-2751801171NO APICAL MERISTEM PROTEIN
1ut7_A8e-2751801171NO APICAL MERISTEM PROTEIN
1ut7_B8e-2751801171NO APICAL MERISTEM PROTEIN
4dul_A8e-2751801171NAC domain-containing protein 19
4dul_B8e-2751801171NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032221.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340832.10.0PREDICTED: protein NTM1-like 9
TrEMBLA0A498KJE20.0A0A498KJE2_MALDO; Uncharacterized protein
STRINGXP_009340832.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.19e-32NAC transcription factor-like 9