PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 962aa MW: 106024 Da PI: 5.7814

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr032211.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.5	2.3e-27	588	637	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+ WP+Rki+++ Pbr032211.1 588 KNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGIMKWPSRKISKV 637 89*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.563	571	657	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-25	589	637	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-20	861	947	No hit	No description
PROSITE profile	PS51745	20.526	865	947	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	8.6E-22	865	946	No hit	No description
SMART	SM00666	1.4E-20	865	947	IPR000270	PB1 domain
CDD	cd06407	1.05E-32	866	946	No hit	No description
Pfam	PF00564	1.6E-16	868	946	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence Send to blast
MDYHFLPKDK GNNHWASAGA QVENLASFDG GTTIQIPEDM FNNISELMNF DTYSGWCSPA 60 AMDQVAASLG VPSCTSVTYA PFYALNFVEP NGEQSGAGTF NVGENFSCGD KIVFDQMGTP 120 QYGVSTDSDE ANDSAIKLNN SSFQHNNPMD MERYMIYRPP GLSLNEKMLK ALSMFKEISS 180 GGILAQLWVP MKHGDQYLLS TCEQPYLLDH ILAGYREVSR MFTFSTKGKQ SSILGLPGRV 240 FVSKIPEWTS NVIFYNKTEY IRVDYAANHQ VRGSIALPIF DFDMEMSCCA VLELVSTKAK 300 ANFDTEMEIV CSALQAVNLR TNAPLRLLPQ CLSENQRAAL TEISDVLRVV CHAHLLPLAM 360 TWIPCCYSEG NGDEIKRVRA KGGITNSNEK CIICIEETAC YVNDSRMQGF VHACAEHHLE 420 EGEGIAGKAL QSNHPFFIND VKVYDICEYP LVHHARKYGL NAAVAIKLRS TYTGDDDYIL 480 EFFLPVNVKG STEQQLLLNN LSGTMQKICK SLRTASDAEL VGLEGTNTRF PQRHSRTTLS 540 DSEMKSAKNV TFNVFNRKNG GIKRDNPPGK APSGSRRQVE KKRTTTGKNV SLSVLQQYFS 600 GSLKDAAKSI GVCPTTLKRI CRQHGIMKWP SRKISKVNRS LEKIQTVLDS VQGVDGGLKY 660 DPTTGGFVAT GSIIQEVDAP QNILFPKKNL HVENSEPVTQ DLVSVSSLSI NNGEILTVKL 720 EKDGSCVPTS HENEVKNQSI PLMPQGDSKP IAIDFGSCDP TNRGTTPDTK GSYLAKEVNN 780 WGYTQNSDCH FVSQSSGFLV ATDEMDMGVH GNGGIVEHNQ HSSSSLTDSS NGFGSIMQGY 840 SSSSQSFEEH KHPQVETTTG ENGSKIIVKA TYIEDIIRFK FEPSLGCLQL YEEVAKRLKL 900 QTGTFQLRYL DDEEEWVMLV CDADLQECLE ILDDIGTRCV KFLVRDITFG MGSSGSSNFL 960 G*

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence Send to blast

MDYHFLPKDK GNNHWASAGA QVENLASFDG GTTIQIPEDM FNNISELMNF DTYSGWCSPA  60
AMDQVAASLG VPSCTSVTYA PFYALNFVEP NGEQSGAGTF NVGENFSCGD KIVFDQMGTP  120
QYGVSTDSDE ANDSAIKLNN SSFQHNNPMD MERYMIYRPP GLSLNEKMLK ALSMFKEISS  180
GGILAQLWVP MKHGDQYLLS TCEQPYLLDH ILAGYREVSR MFTFSTKGKQ SSILGLPGRV  240
FVSKIPEWTS NVIFYNKTEY IRVDYAANHQ VRGSIALPIF DFDMEMSCCA VLELVSTKAK  300
ANFDTEMEIV CSALQAVNLR TNAPLRLLPQ CLSENQRAAL TEISDVLRVV CHAHLLPLAM  360
TWIPCCYSEG NGDEIKRVRA KGGITNSNEK CIICIEETAC YVNDSRMQGF VHACAEHHLE  420
EGEGIAGKAL QSNHPFFIND VKVYDICEYP LVHHARKYGL NAAVAIKLRS TYTGDDDYIL  480
EFFLPVNVKG STEQQLLLNN LSGTMQKICK SLRTASDAEL VGLEGTNTRF PQRHSRTTLS  540
DSEMKSAKNV TFNVFNRKNG GIKRDNPPGK APSGSRRQVE KKRTTTGKNV SLSVLQQYFS  600
GSLKDAAKSI GVCPTTLKRI CRQHGIMKWP SRKISKVNRS LEKIQTVLDS VQGVDGGLKY  660
DPTTGGFVAT GSIIQEVDAP QNILFPKKNL HVENSEPVTQ DLVSVSSLSI NNGEILTVKL  720
EKDGSCVPTS HENEVKNQSI PLMPQGDSKP IAIDFGSCDP TNRGTTPDTK GSYLAKEVNN  780
WGYTQNSDCH FVSQSSGFLV ATDEMDMGVH GNGGIVEHNQ HSSSSLTDSS NGFGSIMQGY  840
SSSSQSFEEH KHPQVETTTG ENGSKIIVKA TYIEDIIRFK FEPSLGCLQL YEEVAKRLKL  900
QTGTFQLRYL DDEEEWVMLV CDADLQECLE ILDDIGTRCV KFLVRDITFG MGSSGSSNFL  960
G*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr032211.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009340892.1	0.0	PREDICTED: protein NLP9-like isoform X2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A498K4H3	0.0	A0A498K4H3_MALDO; Uncharacterized protein
STRING	XP_009340892.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]