PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr031702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NF-YA | ||||||||
Protein Properties | Length: 302aa MW: 32994.5 Da PI: 9.2292 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.3 | 4.7e-32 | 146 | 202 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl ksrkpylheSRh hAl+R RgsgGrF Pbr031702.1 146 DGPIYVNAKQYRGILRRRQSRAKLEAQNKL-LKSRKPYLHESRHLHALNRVRGSGGRF 202 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.6E-35 | 144 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.677 | 145 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.2E-23 | 148 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.2E-27 | 148 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 150 | 170 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.2E-23 | 179 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MSWNPSERQI SESLSKDVSF KVVFPPQGHH DAKHLGLQLQ TDQGSSSTTL SIGHSQGQCN 60 SSESGEDETY GKGADGKLKP VFLPSNQDLM SNPSQVGYSN VVGCIPYPYV GPYFSGFATA 120 YGSQAMSHML GIVPTRVPLP PDLAQDGPIY VNAKQYRGIL RRRQSRAKLE AQNKLLKSRK 180 PYLHESRHLH ALNRVRGSGG RFLSTKRQSD QNASSSTHYV SDSLSVHQKD TGDTESHHSE 240 SSEFLPSVAI HSDMTSVSNT NDNFRQADRR FSGIPPHMSG AMEFHGGFMH AGNQHSASVV 300 R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-20 | 146 | 206 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr031702.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009340454.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-4-like | ||||
Refseq | XP_018499326.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-4-like | ||||
TrEMBL | A0A498KFE5 | 1e-174 | A0A498KFE5_MALDO; Uncharacterized protein | ||||
STRING | XP_009340453.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 2e-45 | nuclear factor Y, subunit A3 |