PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031557.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 354aa    MW: 39665 Da    PI: 4.563
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031557.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20115165155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GVr+++ +g+W+AeIrdp     r +r +lg+f+taeeAa  +++a+ kl+g
  Pbr031557.1 115 KKYRGVRQRP-WGKWAAEIRDPA----RrQRLWLGTFDTAEEAAMVYDNAAIKLRG 165
                  59********.**********82....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-34115172No hitNo description
PfamPF008471.8E-13116165IPR001471AP2/ERF domain
SMARTSM003805.1E-39116179IPR001471AP2/ERF domain
PROSITE profilePS5103224.131116173IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-22116173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-31116173IPR001471AP2/ERF domain
PRINTSPR003676.0E-11117128IPR001471AP2/ERF domain
PRINTSPR003676.0E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MESSILCPIK YSEHRSTTKK LMKPRKKAAS ESASTVTRRI VRISVTDPDA TDSSSDEEEE  60
FFGRQRVKHY INEINIETDF RNSLVINNAR KRPAAEIPVN RRPMKNAVSP TNGGKKYRGV  120
RQRPWGKWAA EIRDPARRQR LWLGTFDTAE EAAMVYDNAA IKLRGPDALT NFVAPPQKEE  180
EKSEPPVIEP IEVETKGTTS ASGYDSGSES HNLASPTSVL HFRSQPIIEE ADKPQKFQVS  240
NRVDEDEDET ETGTNILSDD LSYFGNYLPL DLPYFDDAFS FPAPESPLFD SPLFFDDGPA  300
AAASLPDCFM KDDISELFRD TYDTSLSHTT SPMFQGDDYF QDILFGSDPL VVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22114172362ATERF1
3gcc_A4e-22114172362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031557.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324370.0GU732437.1 Malus x domestica AP2 domain class transcription factor (AP2D13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357335.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLD5L0Z70.0D5L0Z7_MALDO; AP2 domain class transcription factor
STRINGXP_009357335.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-51cytokinin response factor 4