PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr031373.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 352aa MW: 39777.1 Da PI: 4.6661 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.6 | 3.9e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v s + Pbr031373.1 6 LPPGFRFHPTDEELVAYYLDRKINGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVNS-Q 101 79****************************.99**************96435566888**************************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kktLv+y+grap+g +t+Wvmheyrl Pbr031373.1 102 RRAVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-64 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.593 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MAPMSLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVNS QRRAVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLVNSVCGN ASSSLKDSYA LCRVFKKTIQ MPKSNKEYTP IGINNADNDS 180 IWVSNEQLLG EDTSGINEGA SRGIETDQDE NYSNHDHPKF LSDTSSSDLT QGTPTETGIA 240 DDLQAPFASD EANSSADLYS FGVHCSSDPL QETYIPPNAS SLNTYQFPYP PLELEDFPQI 300 NLAAETNTAK PEIIDKYMSY DKFKDYMNGT FEEIFSLCSS QDNSVPLSLQ D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-59 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-59 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-59 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-59 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-59 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-59 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-59 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-59 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-59 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-59 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-59 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-59 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-59 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-59 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr031373.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009340131.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
TrEMBL | A0A498IZE7 | 0.0 | A0A498IZE7_MALDO; Uncharacterized protein | ||||
STRING | XP_009340131.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10508 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-107 | NAC domain containing protein 20 |