PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030778.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 227aa    MW: 25449.9 Da    PI: 8.9477
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030778.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.91e-1970124256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq + Lee F++n++++ +++e LA++l+L  rqV vWFqNrRa+ k
  Pbr030778.1  70 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSK 124
                  78889************************************************98 PP
2HD-ZIP_I/II119.12.4e-3870158189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  Pbr030778.1  70 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 158
                  69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-2055127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-1955120IPR009057Homeodomain-like
PROSITE profilePS5007117.37866126IPR001356Homeobox domain
SMARTSM003898.5E-1868130IPR001356Homeobox domain
CDDcd000864.15E-1769127No hitNo description
PfamPF000464.6E-1770124IPR001356Homeobox domain
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
SMARTSM003401.5E-21126169IPR003106Leucine zipper, homeobox-associated
PfamPF021837.2E-10126160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAVLPTAMGS SSLELTMSVP GFSSYPSFPN SSVRDLDINQ IPSLQGDQEE WMTAGMEDEE  60
ESSNGSGPPR KKLRLTKEQS RLLEESFRQN HTLNPKQKEA LAMQLKLRPR QVEVWFQNRR  120
ARSKLKQTEM ECEYLKRWFG SLTEQNRRLQ REVEELRAMK VSPPTVLYPH SCDPLPASTL  180
TMCPRCERVT TTTTPDRDRG GGPTKTNNIP ATAAPTLSTK VATPAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030778.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339667.11e-167PREDICTED: homeobox-leucine zipper protein HOX3-like
RefseqXP_009356143.21e-166PREDICTED: homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX18e-86HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH388e-86HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A498I8H61e-148A0A498I8H6_MALDO; Mitogen-activated protein kinase
STRINGXP_009339667.11e-166(Pyrus x bretschneideri)
STRINGXP_009356143.11e-166(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.16e-79homeobox-leucine zipper protein 17