PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030748.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 236aa    MW: 26348.3 Da    PI: 4.8004
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030748.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1860111155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +++Wv+e r+p++n  + r++lg++ tae+Aa+a++ a+++++g
  Pbr030748.1  60 PVYRGVRRRN-NNKWVCEMREPNKN--KSRIWLGTYPTAEMAARAHDVAALAFRG 111
                  68*****887.8*********9777..5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-1460111IPR001471AP2/ERF domain
PROSITE profilePS5103222.45861119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3061121IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-2261121IPR016177DNA-binding domain
SMARTSM003801.2E-2861125IPR001471AP2/ERF domain
CDDcd000183.01E-2862121No hitNo description
PRINTSPR003678.3E-86273IPR001471AP2/ERF domain
PRINTSPR003678.3E-885101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNTIFSQISD SSEKPESSSD DTGILTRSQL ASFSDEEVIL ASSRPKKRAG RRVFKETRHP  60
VYRGVRRRNN NKWVCEMREP NKNKSRIWLG TYPTAEMAAR AHDVAALAFR GKLACLNFAD  120
SAWRLPVPAS TDSVDIRRAA AEAAETFRPE EFAGVSESGD DEKESKKMEG EKDCGGAEES  180
GILLYLDEEE MFDMPRLLDS MAEGLLLSPP HSSGGRMNWD DMESNDDVRL WSFSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1448118371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030748.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5435040.0KC543504.1 Malus x domestica CBF/DREB 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499151.11e-173PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9FJ931e-66DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A1W6R6W41e-155A0A1W6R6W4_9ROSA; CBF3
STRINGXP_008364557.11e-141(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-62C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]