PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030637.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family RAV
Protein Properties Length: 312aa    MW: 35287.2 Da    PI: 9.0981
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030637.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.9e-123179155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 sgykGV    ++grW A+I++      + r++lg+f+ +eeAak +  a +k++g
  Pbr030637.1 31 SGYKGVV-PQSNGRWGAQIYEK-----SHRVWLGTFDDEEEAAKTYNIASLKFRG 79
                 89****7.7779*********4.....6*******************99999987 PP
2B390.41.4e-28165267198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+kv tpsdv++++r+v+pk++ae+h       g    +++ l++ede g++W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v F+++  ++++
  Pbr030637.1 165 FEKVATPSDVGRLNRMVIPKQHAEKHfqvhlsvG--FGKGVLLKFEDEVGNVWRFGYCYWSSSRSYVLSKGWIRFVKEKKLKAGDVVRFERSVGEDKK 260
                  89************************88887652..237899************************************************88668888 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  +++  + 
  Pbr030637.1 261 MFIDCRP 267
                  8887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-163188IPR016177DNA-binding domain
CDDcd000183.80E-223186No hitNo description
PfamPF008474.1E-53179IPR001471AP2/ERF domain
PROSITE profilePS5103219.1373287IPR001471AP2/ERF domain
SMARTSM003801.9E-183293IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-173387IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-34158269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-27162266IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-25164254No hitNo description
PfamPF023624.5E-26165268IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084165269IPR003340B3 DNA binding domain
SMARTSM010198.3E-22165268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDLMSCWNRS TRDYSTVIGA KAASSNKLPS SGYKGVVPQS NGRWGAQIYE KSHRVWLGTF  60
DDEEEAAKTY NIASLKFRGL DAITNFSRNQ MTPYECDVTE ALFLESHSKA EIVDMLRKHS  120
YANELEMYKH KLYNGGALGL DAGGKRMKCH LDLMDTCSSE RELLFEKVAT PSDVGRLNRM  180
VIPKQHAEKH FQVHLSVGFG KGVLLKFEDE VGNVWRFGYC YWSSSRSYVL SKGWIRFVKE  240
KKLKAGDVVR FERSVGEDKK MFIDCRPRNV DVSGIREMHS RVGEPLGAVQ DDGMVRLFGV  300
NIQPSTGPRF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4216227411126DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030637.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357114.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-96RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A498J2190.0A0A498J219_MALDO; Uncharacterized protein
STRINGXP_009357114.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.25e-99related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]