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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr030637.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | RAV | ||||||||
Protein Properties | Length: 312aa MW: 35287.2 Da PI: 9.0981 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.3 | 6.9e-12 | 31 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 sgykGV ++grW A+I++ + r++lg+f+ +eeAak + a +k++g Pbr030637.1 31 SGYKGVV-PQSNGRWGAQIYEK-----SHRVWLGTFDDEEEAAKTYNIASLKFRG 79 89****7.7779*********4.....6*******************99999987 PP | |||||||
2 | B3 | 90.4 | 1.4e-28 | 165 | 267 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kv tpsdv++++r+v+pk++ae+h g +++ l++ede g++W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v F+++ ++++ Pbr030637.1 165 FEKVATPSDVGRLNRMVIPKQHAEKHfqvhlsvG--FGKGVLLKFEDEVGNVWRFGYCYWSSSRSYVLSKGWIRFVKEKKLKAGDVVRFERSVGEDKK 260 89************************88887652..237899************************************************88668888 PP .EEEEE- CS B3 92 lvvkvfr 98 +++ + Pbr030637.1 261 MFIDCRP 267 8887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-16 | 31 | 88 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.80E-22 | 31 | 86 | No hit | No description |
Pfam | PF00847 | 4.1E-5 | 31 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 32 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-18 | 32 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-17 | 33 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-34 | 158 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-27 | 162 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.22E-25 | 164 | 254 | No hit | No description |
Pfam | PF02362 | 4.5E-26 | 165 | 268 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.084 | 165 | 269 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.3E-22 | 165 | 268 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MDLMSCWNRS TRDYSTVIGA KAASSNKLPS SGYKGVVPQS NGRWGAQIYE KSHRVWLGTF 60 DDEEEAAKTY NIASLKFRGL DAITNFSRNQ MTPYECDVTE ALFLESHSKA EIVDMLRKHS 120 YANELEMYKH KLYNGGALGL DAGGKRMKCH LDLMDTCSSE RELLFEKVAT PSDVGRLNRM 180 VIPKQHAEKH FQVHLSVGFG KGVLLKFEDE VGNVWRFGYC YWSSSRSYVL SKGWIRFVKE 240 KKLKAGDVVR FERSVGEDKK MFIDCRPRNV DVSGIREMHS RVGEPLGAVQ DDGMVRLFGV 300 NIQPSTGPRF Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-42 | 162 | 274 | 11 | 126 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr030637.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009357114.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | P82280 | 1e-96 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A498J219 | 0.0 | A0A498J219_MALDO; Uncharacterized protein | ||||
STRING | XP_009357114.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 5e-99 | related to ABI3/VP1 2 |