PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030371.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 418aa    MW: 46423.2 Da    PI: 8.4469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030371.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.6e-07238260123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C+ Cgk F+r  nL+ H+r H
  Pbr030371.1 238 HYCQVCGKGFKRDANLRMHMRAH 260
                  68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.2E-6236264No hitNo description
PROSITE profilePS5015712.653238265IPR007087Zinc finger, C2H2
SMARTSM003550.0034238260IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-6238264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
SMARTSM0035577301334IPR015880Zinc finger, C2H2-like
SMARTSM0035522339361IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MMSGAPSNCF QTMLQQQQHH LGLQIYEDPD QVSSFSLEPN SSSSSVPDNH STSLLCNVSV  60
LKEKVHQAKS LVSILISPNH HQSQPQESAT ITLASMSNII QEIIVTASSM MFTCQQMALV  120
STTTPGNHIN NTNTSTTTTG QGLSNPSDHR DHNRLLETNF GGGHGNKIDQ SGFYSTREHT  180
LDWFSDSYND CTTADTSTRI VNQGGNNDKH VQGKELPVSS NYDIIEVDAS DLLAKYTHYC  240
QVCGKGFKRD ANLRMHMRAH GDEYKTIVAL SNPMKKTNNN NDSAGGIDGN MACSTKLPRK  300
YSCPQEGCRW NQKHAKFQPL KSMICVKNHY KRSHCPKMYV CKRCNRKQFS VLSDLRTHEK  360
HCGDLRWQCS CGTTFSRKDK LMGHVALFTG HTPVMITSLT RIGKVDQQSH GSQMQMG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030371.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356942.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT241e-108STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A498INF80.0A0A498INF8_MALDO; Uncharacterized protein
STRINGXP_009356942.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-107C2H2 family protein