PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pbr030322.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

TALE

Protein Properties

Length: 257aa MW: 28095.6 Da PI: 7.5843

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr030322.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.8e-09	77	110	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+ +++ LA+++gL+ +qV++WF N R + Pbr030322.1 77 KLKYPTDTDKHMLATQTGLSRNQVSNWFINARVR 110 679*****************************87 PP
2	BELL	55.9	1.1e-18	1	43	30	72
BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +q+v++sFe vagl sa+pY+s+Al++++rhFrcL + i++q+ Pbr030322.1 1 MQMVVASFESVAGLSSATPYISMALNTVARHFRCLTNSIKDQL 43 9***************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07526	6.9E-13	1	39	IPR006563	POX domain
SMART	SM00389	6.3E-4	66	118	IPR001356	Homeobox domain
CDD	cd00086	6.78E-10	72	115	No hit	No description
PROSITE profile	PS50071	11.143	72	114	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.76E-12	77	121	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-17	80	118	IPR009057	Homeodomain-like
Pfam	PF05920	3.7E-13	80	110	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MQMVVASFES VAGLSSATPY ISMALNTVAR HFRCLTNSIK DQLKHIRKAL GEENMSSAVT 60 AAVTAGCSSK GEKNLAKLKY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH 120 MLETRGGSHE AGQDPINKDG NSANEGTSSR PNNDHQLSMN MMPDRQLECS GDAEQQNQEM 180 KRSRLECQVP SSMDGGLMGF VPYQRGGFEA GGLGAVSLTL GLRHGVESAQ QQQQLQQQED 240 QLRRQLGGQV VRDYVG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr030322.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009356886.1	1e-165	PREDICTED: BEL1-like homeodomain protein 9 isoform X1
Refseq	XP_009356887.1	1e-165	PREDICTED: BEL1-like homeodomain protein 9 isoform X1
Refseq	XP_009356888.1	1e-165	PREDICTED: BEL1-like homeodomain protein 9 isoform X2
TrEMBL	A0A498IQ86	1e-160	A0A498IQ86_MALDO; Uncharacterized protein
STRING	XP_009356886.1	1e-164	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3481	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	1e-36	BEL1-like homeodomain 8