PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030110.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 507aa    MW: 55561 Da    PI: 8.4865
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030110.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.0001597117323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C  Cgk F ++ +L  H++ H
  Pbr030110.1  97 CRECGKGFQSWKSLFGHMKFH 117
                  *******************99 PP
2zf-C2H211.30.0011342364123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k+F++   L  H  +H
  Pbr030110.1 342 FECTTCNKVFRSYQALGGHRASH 364
                  89**********99999998887 PP
3zf-C2H211.90.00068413435123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C ++Fs+   L  H r+H
  Pbr030110.1 413 HSCPICYRVFSSGQALGGHKRSH 435
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.15931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785931IPR007087Zinc finger, C2H2
PfamPF139125.4E-6932IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-4931IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.89E-8931No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576677.89E-890117No hitNo description
SMARTSM003550.1195117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90795122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
PfamPF139124.1E-497119IPR007087Zinc finger, C2H2
SMARTSM003550.039342364IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596342369IPR007087Zinc finger, C2H2
SuperFamilySSF576673.0E-7342364No hitNo description
PfamPF139121.8E-12342366IPR007087Zinc finger, C2H2
PROSITE patternPS000280344364IPR007087Zinc finger, C2H2
SuperFamilySSF576673.0E-7408435No hitNo description
SMARTSM003550.24413435IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141413435IPR007087Zinc finger, C2H2
PfamPF139123.4E-11413436IPR007087Zinc finger, C2H2
PROSITE patternPS000280415435IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MEEDQELKYV CKFCSKSFPC GRSLGGHMRC HLINNSLETE EKLNTGRVKL SSSNNGGSDF  60
EGGTHQQPGY GLRENPKKTW RLTDSSEDTS FHPDRFCREC GKGFQSWKSL FGHMKFHSEK  120
EKVSIESLEE EHEDSWTSQS ENKTTAAPPN RGRRSGRKTR YMGATTSSSS FSIVAAAATT  180
SSVSEIEQEQ EEVAMCLMML SRDSGHWGGL KLVARDSFDG NSGFSDPPSS VGTTRVADIK  240
SKIATTLKLK NKLNKKVLEP RNFESLAVLE GRKSKFCSSA GGFSNNDKLG SNKYNSSKRK  300
IKETCDFELR SDQSPKNLST SRADILDSEV VVCKSSQKRS KFECTTCNKV FRSYQALGGH  360
RASHKKTKGC FASKIESGEN TMETDISPGS CCNNDNPIEQ EIAESGAKST KGHSCPICYR  420
VFSSGQALGG HKRSHLIGEA KITSQTLVIQ KPAAPEVRNF LDLNLPAPVE EESSSNHDAA  480
AVAFKPWWVG SSSHKHEAAL VGLISN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030110.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339147.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A498JMX00.0A0A498JMX0_MALDO; Uncharacterized protein
STRINGXP_009339147.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-31C2H2-like zinc finger protein