PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030032.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 550aa    MW: 58764.6 Da    PI: 5.0645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030032.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-09365413355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pbr030032.1 365 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 413
                  58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-17360430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-11360417No hitNo description
PROSITE profilePS5088815.485362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16363429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6365413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10368418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MDLGDQDKFE LENRNDDPMN FSPGVTPDWR FGGSNLTTTS MGLVPTGNCL AVGSSSRSSA  60
SMAESFNPTL WDHPTSSQDL GFCDMNVQNS ASTSDSIVIR KGIPASLRSG IDRALDMSWN  120
PPNSMLKGEI FLPNGPGVLP QSLSQFPADS AFIERAARFS CFNGGNVSDM VNHFGVPETM  180
SMYSRGGGMM PWTQELVAGN GSKGVSGVQS QRTELNGDVS LPMEQGTTEG SPLKNEKKSQ  240
SLVKSRDEAK HAIGGSGNES DEADYSSGGG AGQEEASMLE GAEPSSKGSK KRKRSGQANE  300
LDQANAQPPC ESAMDTTEFQ KKGEQQPAST PNKTTAKQGK QGSQASDPPK EDYIHVRARR  360
GQATNSHSLA ERVRREKISE RMKFLQDLVP GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS  420
MKLATVNPRL DFDIEGLLAK DILLSRVGPS STLGFSPVMP MAYPQLHPSQ PGLIQAGLCG  480
MGSSSDLLRR AMGSQMTPVA GGFKEPSQLP NVWEDELHNV VQMSYGAGTP PSSQDVDGSA  540
PPGQMKVEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289294KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356474.10.0PREDICTED: transcription factor bHLH49
TrEMBLA0A498I7J50.0A0A498I7J5_MALDO; Uncharacterized protein
STRINGXP_009356474.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-124bHLH family protein