PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030017.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 334aa    MW: 36536.1 Da    PI: 6.5922
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030017.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.15e-164493255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  Pbr030017.2 44 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 93
                 899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1840114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-2241114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.0444292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-134493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-144497No hitNo description
SMARTSM003538.0E-124898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRTAAKGNQE EDEYDEEEFG SRKEGPSNSN SKDAKNNDKA SAIRSKHSVT EQRRRSKINE  60
RFQILRDLIP HSDQKRDTAS FLLEVIEYVQ YLQEKVHKYE GSYQGWSPEP TKLMPWRNSH  120
WRVQSFVGNP QAIKSDTAPV SPFPGKFDEN NISINPNVLG NSTSNPVETN PSRDVASKIV  180
DQQPEIVNKG IPLPMPLPNF TPSVRSGGVL AHPLQGQISD AQSTQCPTTS ASDALSQHEH  240
LTVEGGTISI SSVYSQGLLN SLSQVLQSAG VDLSHASISV QIDLGNRANR GLSSGTPASK  300
DNENPHSSNQ TMAHFRDAGS GEDSDQAHKR LKT*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030017.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356463.10.0PREDICTED: transcription factor BIM2
SwissprotQ9CAA41e-114BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A498I7K50.0A0A498I7K5_MALDO; Uncharacterized protein
STRINGXP_009356463.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-102BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]