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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029956.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 26719.1 Da PI: 4.8218 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.6 | 3.9e-30 | 42 | 174 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 lp G+rF+Pt++e+vv++L +k+ ++ +++ ikevd+y+++P++Lp+ k++a+ + y+F++r+ a++ + + a++ gyWk + evl Pbr029956.1 42 LPLGYRFNPTEDEIVVYFLFNKIMDRAMPTYGLIKEVDVYEYDPHQLPNgdfKHNAGCNAAYYFANREPFDASEGKIIKtAANGGYWKVIDDEYEVLF 139 699***************************999***************5455666677788*******999976666665999************999 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k ++ vg ++ fy+g+ap+g+kt vm+eyrl Pbr029956.1 140 KdSEVIVGFEAVMNFYEGKAPNGTKTPFVMNEYRL 174 8455669**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-33 | 39 | 202 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.296 | 42 | 203 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-14 | 43 | 174 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MASSASSQSS SASSQSADKY EGFDLLKCST VQEGKKEAEV RLPLGYRFNP TEDEIVVYFL 60 FNKIMDRAMP TYGLIKEVDV YEYDPHQLPN GDFKHNAGCN AAYYFANREP FDASEGKIIK 120 TAANGGYWKV IDDEYEVLFK DSEVIVGFEA VMNFYEGKAP NGTKTPFVMN EYRLNPRVVP 180 AHVLNDSIRN KIERYVVCRI INEEVSNQPV IDYRKESLEL LLKYASAGTV KDVEPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-22 | 32 | 204 | 5 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029956.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF198126 | 0.0 | KF198126.1 Malus hupehensis NAC domain protein (NAC119) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356386.1 | 1e-176 | PREDICTED: NAC transcription factor 29-like | ||||
Refseq | XP_009356387.1 | 1e-176 | PREDICTED: NAC transcription factor 29-like | ||||
Refseq | XP_009356388.1 | 1e-176 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A498IBU2 | 1e-157 | A0A498IBU2_MALDO; Uncharacterized protein | ||||
STRING | XP_009356386.1 | 1e-175 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15772 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 9e-28 | NAC-like, activated by AP3/PI |