PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029927.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 525aa    MW: 57077.5 Da    PI: 8.2209
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029927.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.72.4e-33243299259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  +++++ei+Y+geHnhe
  Pbr029927.2 243 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSI-EGQITEIIYKGEHNHE 299
                  8****************************************.***************8 PP
2WRKY107.56.8e-34415473159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++ C+v+k+ver+++dpk+v++tYeg+Hnh+
  Pbr029927.2 415 LDDGYRWRKYGQKVVKGNPYPRSYYKCTFPACNVRKHVERASTDPKAVITTYEGKHNHD 473
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-29235301IPR003657WRKY domain
PROSITE profilePS5081123.583237301IPR003657WRKY domain
SuperFamilySSF1182904.58E-26241301IPR003657WRKY domain
SMARTSM007746.3E-36242300IPR003657WRKY domain
PfamPF031064.8E-26243299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-37400475IPR003657WRKY domain
SuperFamilySSF1182902.62E-29407475IPR003657WRKY domain
PROSITE profilePS5081137.574410475IPR003657WRKY domain
SMARTSM007743.7E-39415474IPR003657WRKY domain
PfamPF031068.8E-26416473IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MADNHEQQSP PPPGPSQPSK PAATHHPPRP TITLPQRTSF ESIFSSAGGG NTGPGLGLGF  60
SPGPMTLVSN FFSDGGDDCK SFSQLLAGAM TSPSPRAPGF QQLEERNSGD GEGSSDFRFK  120
QNRPPSMFSV PTPSGFLDSP GIFSPGQGPF GMTHQQALAQ VTAQAAALSP SFFNFSTEYS  180
TSFSTAPATA LTQPPSSTSD TTPPQEILSG TPDSAVATKE SSDISLSDQR SQPSSFTVDK  240
PNDDGYNWRK YGQKHVKGSE FPRSYYKCTH PNCPVKKKVE RSIEGQITEI IYKGEHNHER  300
PQSKRPLNGN SQANSDLASQ VHGGNSNKPK EGTGPYSMSK KRRESSQAKH DNLSGTSDSE  360
EVEDAETRVD EKDEDQPDPK RRNTEVRSEA AAASTHRTVT EPRIIVQTTS EVDLLDDGYR  420
WRKYGQKVVK GNPYPRSYYK CTFPACNVRK HVERASTDPK AVITTYEGKH NHDVPASKTS  480
SHYTGNNASN LRSTNPGNGK VNQMDLRNRD QQPIASLRLK EQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-42243476878Probable WRKY transcription factor 4
2lex_A4e-42243476878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029927.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356349.10.0PREDICTED: probable WRKY transcription factor 3
RefseqXP_009356350.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-163WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A498IBH40.0A0A498IBH4_MALDO; Uncharacterized protein
STRINGXP_009356349.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-145WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]