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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029909.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 382aa MW: 41940 Da PI: 7.399 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl Pbr029909.1 14 KGPWTPEEDQKLLACIEEHGHGSWRALPAKAGLQRCGKSCRLRWSNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 7.9e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E + +++++++ G++ W++Ia++++ +Rt++++k++w+++l Pbr029909.1 67 RGNFSLQEAQTIIRLHALVGNR-WSAIASHLP-KRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.236 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.971 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.34E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MGRSPCCEKV GLKKGPWTPE EDQKLLACIE EHGHGSWRAL PAKAGLQRCG KSCRLRWSNY 60 LRPDIKRGNF SLQEAQTIIR LHALVGNRWS AIASHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPMTHKLKH HEGHAKDAAN ISHMAQWESA RLEAEARLGK ESKLVITNTN PFQHHLMISS 180 SPNPAHQVVH VRNAPPALPC LDVLKAWQEG CSLTTNSTIR NNVNSTMFSG GSMTDGDDLE 240 SPTSKLNLRH VNNAFDPPPM LKVNNGFPCE SGVLQNNDNV TSGCTDANAA WFADGFRSGN 300 VDEEKNVVVP AELSSMVMEG FTDVLVYDSE DHQQNASLGG EISGNGGDDG SCGGRGFEEN 360 RNYWNRILNL VNASASGSPV F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029909.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356321.1 | 0.0 | PREDICTED: transcription factor MYB80-like | ||||
TrEMBL | A0A498IC08 | 0.0 | A0A498IC08_MALDO; Uncharacterized protein | ||||
STRING | XP_009356321.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF835 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-101 | myb domain protein 16 |