PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 375aa MW: 41677.2 Da PI: 7.0761 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ + +++G+g +W + ++++g++R++k+c++rw++yl Pbr029876.1 14 KGPWSPEEDTTLKAYMEKHGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.8 | 4.5e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Pbr029876.1 69 GGFSEEEDNIICSLYMSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.576 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.39E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.174 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.34E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDTTLKAYME KHGTGGNWIA LPQKIGLRRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYMSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 QRKQQQVQQS RRTASFKQEM IKRSENIANF INIPAGFDNQ NPYDLPELPV VPVTNYQTHN 180 PQLIKDQASI KNMLINLGGR FSHDSDTSNT SFQYPIDILS TSSSDQQFYQ SSINVLSCTS 240 AANSNNYSQF PSTHCDASNG TGGSSSPTMF HGLNDQNNNL QVDHLHQLSE LEVYDNNFAH 300 QHQQLGGFYY QATTETLNNG STAGTSTASA ESEISWGDIN SLVYSTQMVA GYETSCPQAV 360 TVPPDLHAVF AEST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029876.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009338967.1 | 0.0 | PREDICTED: transcription factor RAX3-like | ||||
TrEMBL | A0A498KFR4 | 0.0 | A0A498KFR4_MALDO; Uncharacterized protein | ||||
STRING | XP_009338967.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 2e-75 | myb domain protein 84 |