PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029819.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 604aa    MW: 66625.4 Da    PI: 8.7563
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029819.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.58.9e-15327378155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I         +k  +lg+f t eeAa+a++ a+ k++g
  Pbr029819.1 327 SIYRGVTRHHQHGRWQARIGR----AaGNKDLYLGTFTTQEEAAEAYDIAAIKFRG 378
                  57****************888....2346************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-11187294No hitNo description
Gene3DG3DSA:3.30.730.101.9E-8188210IPR001471AP2/ERF domain
SMARTSM003804.7E-16188298IPR001471AP2/ERF domain
PROSITE profilePS5103213.643188292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-8256293IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-6265293IPR016177DNA-binding domain
CDDcd000181.02E-23327388No hitNo description
PfamPF008471.7E-9327378IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18327388IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-18328387IPR001471AP2/ERF domain
SMARTSM003806.4E-32328392IPR001471AP2/ERF domain
PROSITE profilePS5103219.098328386IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDSSPQNWLL GFSLSNHSHH HQPSHDLSFS GAFTSNSPTH TAGTVADHHR QGASPTSATD  60
LFIFSSRVNG SKLEDFLGGC TTFNTTVTPT SLPQFSTADH HHQTAPLALS ENRIYDPELK  120
TIAASFLRGF STIATTTTTD TLQATKPKNH HPLASSAPLX XXXXXXXXXX XXXXXKKPTD  180
TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQSRKGR QDKMGPLDLF QRTVLIIQKD  240
QNNPKKEHSL RLDHLAFDTL GACGYEKEEK AARAYDLAAL KYWGPTTTTN FPVTNYEKEL  300
WEMKNMTRQE FVASLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRAAG NKDLYLGTFT  360
TQEEAAEAYD IAAIKFRGLN AVTNFDMSHY DVKSIANSNL PIGGMSGKSK NSSDSDSKSI  420
EGNRSADDRD LSFASSVIFA SQQPRSSTLN FAIPLKQDSA SDYWSNIFGN NLSLSNVKNP  480
SSVLDAPISS LFQSCANGSY GNNSSPLPFN MDFSSTSRTS VSETNNAYYG NFNVDGQQHQ  540
QQEQSTSTGT GADLIPFATT IALNSNNGYE TSSGYGTWTG PSLHTFHTHA KTNLFQTPIF  600
GME*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029819.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370128.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A498IAV20.0A0A498IAV2_MALDO; Uncharacterized protein
STRINGXP_009370128.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-123AINTEGUMENTA-like 5