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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr029332.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WRKY | ||||||||
Protein Properties | Length: 406aa MW: 45151.4 Da PI: 7.69 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 8.5e-31 | 270 | 326 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+v+g+++ rsYYrCts +C+v+k+ver ++dpk++++tYeg+Hnh+ Pbr029332.1 270 DGFRWRKYGQKVVQGNPYRRSYYRCTSLKCSVRKHVERVSDDPKAFITTYEGKHNHD 326 9*******************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-33 | 254 | 328 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 262 | 328 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.12 | 263 | 328 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-34 | 268 | 327 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-24 | 270 | 326 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MALTLTQKSV VFPRAAQATT AAVVCFLLLI PLLIIIREEL VSWTLTKQEP SRIALEETQE 60 QGQRNQGPQE LELDREIKPK GTSFFSNIFK KPPRAEDYTI LQAILSIDML LIFIATFFGL 120 GSSFTATDNL SQIDEALGYK PQTINAFVSL ISIWNFLCSL NERREGSEGR VEDQSELGLR 180 VQSCQTKAPP PYDPQATGGI TAGGATPDNS CGLSGECEEA SKGLEAENYE PRSKIRKSEN 240 HSIEAGISGE GVQDPRVVVQ NSVESDMTGD GFRWRKYGQK VVQGNPYRRS YYRCTSLKCS 300 VRKHVERVSD DPKAFITTYE GKHNHDMPLR NKTQEHLRRI QLKKSHENVR WAQRKKQTPK 360 VTAAVILIPA LDALLCYAMP IVSLGNLFDG CFDGLETKNG VNILP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-32 | 259 | 328 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 8e-32 | 259 | 328 | 8 | 77 | Probable WRKY transcription factor 4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr029332.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ020109 | 0.0 | KJ020109.1 Malus hybrid cultivar TTG2 protein (TTG2) mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6790 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 2e-35 | WRKY family protein |