PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029330.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 481aa    MW: 52703.8 Da    PI: 9.4062
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029330.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.2e-33194250360
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Pbr029330.1 194 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHSK 250
                  9***************************************.***************85 PP
2WRKY103.61.1e-32403459359
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k+ver ++dpk++++tYeg+Hnh+
  Pbr029330.1 403 DGFRWRKYGQKVVKGNPYPRSYYRCTSLKCSVRKHVERVSDDPKAFITTYEGKHNHD 459
                  9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-30184251IPR003657WRKY domain
SuperFamilySSF1182904.18E-26189251IPR003657WRKY domain
SMARTSM007743.8E-37192250IPR003657WRKY domain
PfamPF031061.5E-25194248IPR003657WRKY domain
PROSITE profilePS5081123.686194251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-34387461IPR003657WRKY domain
SuperFamilySSF1182901.23E-28395461IPR003657WRKY domain
PROSITE profilePS5081134.842396461IPR003657WRKY domain
SMARTSM007743.6E-37401460IPR003657WRKY domain
PfamPF031068.1E-26403459IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDIKEAERVV IAKPVASRPT CSTFRSFTEL LAGAIDASPS NVSSETAVPA IRPKTVRFKP  60
MVNHAVAGLV SSQAHISGAA HSHSSEQVSK SDSRSTVIYK PLAKVVSRAT VSVLANMGNF  120
NTSHQSTQLS VNVGVLHPNQ DKCFRSQSSN LRHNNPSRAE TNQTTEPLKI ASQNMEEDLK  180
LIPSTANTDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSLDGQIAEI  240
VYKGEHNHSK PQPPKRSSSG TQGLGIPFDG TGQDTNNRLL NSHLNERNEG SEGRVEDQNE  300
VGLPVQSYQT KAPLPYDPHA TGGITAGGAT PDNSCGRSAE CEEASKGLEV EDYEPRSKRR  360
LDEIRGLGLA MHALVLKAGI SGEGVQDPRV MVQNSVESDM TGDGFRWRKY GQKVVKGNPY  420
PRSYYRCTSL KCSVRKHVER VSDDPKAFIT TYEGKHNHDM PLRNTNAGAS EKDTTTKEKP  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32194461877Probable WRKY transcription factor 4
2lex_A2e-32194461877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029330.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0201090.0KJ020109.1 Malus hybrid cultivar TTG2 protein (TTG2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338560.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_018498928.10.0PREDICTED: WRKY transcription factor 44-like
TrEMBLX2F1V20.0X2F1V2_9ROSA; TTG2 protein
STRINGXP_009338560.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-107WRKY family protein