PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029155.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 359aa    MW: 40519 Da    PI: 5.1857
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029155.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.9e-083083402254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp++e++++L +++gL+ +q+ +WF N+R +
  Pbr029155.1 308 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 340
                  69*****************************87 PP
2ELK29.12.2e-10261282122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  Pbr029155.1 261 ELKHELKQGYKEKIVDIREEIL 282
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-1896140IPR005540KNOX1
PfamPF037905.0E-1798139IPR005540KNOX1
SMARTSM012564.5E-21150205IPR005541KNOX2
PfamPF037915.1E-16155204IPR005541KNOX2
PfamPF037898.0E-7261282IPR005539ELK domain
SMARTSM011886.1E-4261282IPR005539ELK domain
PROSITE profilePS512139.969261281IPR005539ELK domain
PROSITE profilePS5007111.758281344IPR001356Homeobox domain
SuperFamilySSF466893.55E-16283346IPR009057Homeodomain-like
SMARTSM003894.1E-11283348IPR001356Homeobox domain
CDDcd000861.78E-11284345No hitNo description
Gene3DG3DSA:1.10.10.601.7E-25288347IPR009057Homeodomain-like
PfamPF059209.4E-18301340IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAFHHHQQQT PHEMAFHSFV ADQPTLSGAP TWLNNAAFRQ QNTSFGGLHD AGRNDDVVIS  60
PSGKSSNCSD RNRREISGYD GGEEEEGEDE LECESARFKA DIVEHPLYEQ LVSAHVSCLR  120
IATPVDQLPR IDEQLGQSQR VVDKYSGANG DVGVMDEKDL DLFMTNYVLL LCSFKEQLQQ  180
HVRVHAMEAV MACWELDQSL QSLTGVSTGE GTGATMSDDD DQVDSDINSY DGSLDGPDTM  240
GFGPLVPTES ERSLMERVRQ ELKHELKQGY KEKIVDIREE ILRKRRAGKL PGDTTSVLKS  300
WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHSNISSTS VLKSKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337357RKRNWHSNISSTSVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029155.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338421.10.0PREDICTED: homeobox protein knotted-1-like LET12 isoform X2
SwissprotP480001e-159KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A498HSA70.0A0A498HSA7_MALDO; Uncharacterized protein
STRINGXP_009338420.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-150KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]