PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pbr029040.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 214aa MW: 22959 Da PI: 5.5909

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr029040.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.7	8.1e-43	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++kll++lp+++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ Pbr029040.1 46 PCAACKILRRRCADKCVLAPYFPPSEPAKFTIAHRVFGASNIIKLLQELPDSQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLAKAQ 143 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Pbr029040.1 144 AE 145 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.935	45	146	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-43	46	143	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MECSTETMNT NYTTTSSTMS QSPPSSSPSS PPTLTPTPSP TVVVSPCAAC KILRRRCADK 60 CVLAPYFPPS EPAKFTIAHR VFGASNIIKL LQELPDSQRA DAVSSMVYEA SARIRDPVYG 120 CAGAICHLQK QVNELQAQLA KAQAEVVNMQ CQQANLVALI CMEMSQPNSE QGSPPQSLDH 180 NFVTTIPHGG NQTNLGFLDD STTLGSLWDP LWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	45	153	10	118	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	45	153	10	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr029040.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009338292.1	1e-158	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_009358251.1	1e-158	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	6e-77	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A498KG04	1e-130	A0A498KG04_MALDO; Uncharacterized protein
STRING	XP_009338292.1	1e-157	(Pyrus x bretschneideri)
STRING	XP_009358251.1	1e-157	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-67	LOB domain-containing protein 11