PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029010.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 348aa    MW: 39300.7 Da    PI: 9.2401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029010.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.6e-50151421128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhP+deel+v+yL++k+ +++l++ + i+e+d+yk++Pw+Lp+k+  +e+ewyfFs+r++ky++g+r+nr+++ gyWka g+dk++l++ ++
  Pbr029010.1  15 LPPGFRFHPSDEELIVHYLENKMISHPLPA-QLITEIDLYKYNPWELPNKALFGEDEWYFFSPRHRKYPNGERPNRTAAVGYWKAAGSDKPILTScGS 111
                  79****************************.89***************88888999********************99***************99888 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + +g+kk Lvfy+grapkg+kt+W+m+eyrl
  Pbr029010.1 112 KRIGVKKALVFYTGRAPKGVKTEWIMNEYRL 142
                  89***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-6010168IPR003441NAC domain
PROSITE profilePS510055815169IPR003441NAC domain
PfamPF023652.3E-2516142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEKEPAFTTY STMHLPPGFR FHPSDEELIV HYLENKMISH PLPAQLITEI DLYKYNPWEL  60
PNKALFGEDE WYFFSPRHRK YPNGERPNRT AAVGYWKAAG SDKPILTSCG SKRIGVKKAL  120
VFYTGRAPKG VKTEWIMNEY RLLHCTVNPS RCKGSMRLDD WVLCRVQQRG NSTKNTCNAQ  180
DIYNTEFWRC LPKSGLTVRP TNPIHRADII TDFLYKDCRV LASILAGQPP SPIETSSASF  240
QGSKDSYPVG SNNKVKSTVS ISSSGINSTL KRKIREENTK ENLFPLINLE SKNKDGNVLP  300
SKKLAAGNVV NCYIPNHLQN DIPKANPTVP ANFEEFNEMA FLDTYSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-701117513171NO APICAL MERISTEM PROTEIN
1ut4_B2e-701117513171NO APICAL MERISTEM PROTEIN
1ut7_A2e-701117513171NO APICAL MERISTEM PROTEIN
1ut7_B2e-701117513171NO APICAL MERISTEM PROTEIN
3swm_A2e-701117516174NAC domain-containing protein 19
3swm_B2e-701117516174NAC domain-containing protein 19
3swm_C2e-701117516174NAC domain-containing protein 19
3swm_D2e-701117516174NAC domain-containing protein 19
3swp_A2e-701117516174NAC domain-containing protein 19
3swp_B2e-701117516174NAC domain-containing protein 19
3swp_C2e-701117516174NAC domain-containing protein 19
3swp_D2e-701117516174NAC domain-containing protein 19
4dul_A2e-701117513171NAC domain-containing protein 19
4dul_B2e-701117513171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338296.10.0PREDICTED: NAC domain-containing protein 2-like
SwissprotK4BNG72e-73NAP2_SOLLC; NAC domain-containing protein 2
SwissprotQ9LD449e-73NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A498KB210.0A0A498KB21_MALDO; Uncharacterized protein
STRINGXP_009338296.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.15e-75NAC domain containing protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]