PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028836.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 322aa    MW: 35940.6 Da    PI: 4.4661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028836.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.4e-19112161154
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                  s y+GVr++k +g+W+AeIrd +     +  r +lg+f tae+A ka++a r+++e
  Pbr028836.1 112 SPYRGVRQRK-WGKWAAEIRDpF-----KgVRLWLGTFNTAEDASKAYEAKRLEFE 161
                  68*******9.**********55.....45***********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.1E-385293IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541719.81E-17112161IPR016177DNA-binding domain
SMARTSM003801.9E-17113167IPR001471AP2/ERF domain
PROSITE profilePS5103219.678113171IPR001471AP2/ERF domain
PfamPF008473.8E-11114162IPR001471AP2/ERF domain
PRINTSPR003673.8E-10114125IPR001471AP2/ERF domain
CDDcd000185.35E-23114160No hitNo description
Gene3DG3DSA:3.30.730.103.3E-22114161IPR001471AP2/ERF domain
PRINTSPR003673.8E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAVPRKQSLN QRDRMKKSNP AHQSKIMRKV RIICYDPDAT DDSSSSEDEG GRERRFAKNP  60
KRFVREVTFC PSAHPKPGTA EPESSSQDSN GVRTPKPSKK ALFAKSHRQS SSPYRGVRQR  120
KWGKWAAEIR DPFKGVRLWL GTFNTAEDAS KAYEAKRLEF EEMLAAATSA SAVVSNKNSY  180
NNVEPVSSED SDSVVSQRSP SCVLDLETSA SNNIQNGADL EKETADESTN LEELQIPDLG  240
FLDETLDPLH FDQELNLGPE LDSLCLEDFG QFFDNYSSIE DIQIPGFESD EPSSLPDCDF  300
EDLGKDDIAY WLDEPLNIVC Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-14114154344ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028836.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356273.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_009356274.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A498IAS30.0A0A498IAS3_MALDO; Uncharacterized protein
STRINGXP_009356272.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.29e-33ERF family protein