PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr028812.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 297aa MW: 33244.3 Da PI: 6.6006 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.4e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll+++++ +G g+W++ a+ g++Rt+k+c++rw++yl Pbr028812.1 15 KGPWTLEEDNLLIHYIANHGEGHWNSLAKFAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 1e-16 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Pbr028812.1 68 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 111 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.249 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.39E-31 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.27E-13 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.751 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 68 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-12 | 72 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MAAPRNPNEE HALRKGPWTL EEDNLLIHYI ANHGEGHWNS LAKFAGLKRT GKSCRLRWLN 60 YLKPDIKRGN LTPQEQLLIL ELHSKWGNRW SKIAQHLPGR TDNEIKNYWR TRVQKQARQL 120 NIESNSVQFL DAVRGFWMPI LLQKMKQSSC SSTLSPSQNS ASPSLSPNHT VPSVPLPTSP 180 PGNVTNMFDN YHMSGTSNLA TVPSNILSSE SLISQVPQMA EQSTSLYPAF DHIGYGGLSP 240 DGSYYVDSSS YDMEGLNLDP VSGMGNYDNS QFDCQMVGND WMLDTITDNL WNMDGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-25 | 13 | 117 | 5 | 108 | B-MYB |
1h8a_C | 6e-25 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr028812.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ074462 | 0.0 | DQ074462.1 Malus x domestica MYB7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356251.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9C9G7 | 2e-82 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A498ICJ9 | 0.0 | A0A498ICJ9_MALDO; Uncharacterized protein | ||||
STRING | XP_009356251.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1639 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 1e-81 | myb domain protein 62 |
Publications ? help Back to Top | |||
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