PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr028771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 645aa MW: 72650.9 Da PI: 6.956 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.4 | 1e-12 | 556 | 581 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++ G+C+yGd C+FaHg Pbr028771.1 556 FKTELCNKWQEVGECPYGDHCQFAHG 581 79***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.0E-5 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.33E-4 | 5 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.158 | 43 | 88 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00901 | 47 | 83 | No hit | No description |
SMART | SM00336 | 0.51 | 48 | 88 | IPR000315 | B-box-type zinc finger |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-18 | 550 | 588 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-10 | 552 | 587 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.417 | 555 | 583 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-8 | 555 | 582 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-10 | 556 | 581 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-11 | 589 | 622 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 589 | 623 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.408 | 593 | 621 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.042 | 593 | 620 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MKKSCDLCLD LRPVVYCEAD AARLCLSCDA KVHSANPIVD SHQRTLLCDS CKYRSADDQC 60 LDHRMFMCRV CDQSLHRHSS RPHQKRTIIS SYTGCPSAKE FAAFWGFKLN ENLSTSTGRN 120 AISSHGDGGK YQKSSCNSFI LDQILDLKKL QPSEENNPNS LLVSAHDQQS HDKRSSVHHH 180 NGATSSRKFE SNEELPFYTE SFWHCRSPVQ NSQLWSQNMQ DLGVCEEQTY DHADLNTPDV 240 DSIFRNFEES FGADQYVPYE GHARAKEIAS EIQNTAPLLN FRVKLKKLNR NFEKRCSQTT 300 TVEMQNDTSS TAYGGHTTSA MPQSPLKSQS SADDAVFASL YSAIFDRKPS VSRYDVEESD 360 HDSSSAHRHR QLYHSILVQD HQEMVNRHSR CLKHLQETSE EADALRRENV HLRSLNLELN 420 KHLSLLIHAS VQKKFGSPSS VRTTTPFGIV SGLGDMRTDD KRAEQDVSDE SPTSVIESEG 480 GDAENIDVER FSLPKSISVR SNGYVKAAHA AQAGASTATR TGSATTFNAS QKVFVPIGVK 540 EEEPPVELEV YNQGMFKTEL CNKWQEVGEC PYGDHCQFAH GIEELRPVIR HPRYKTDVCR 600 MMLSGVVCPY GHRCHFRHAL TENEKLMVPN KPGQRQFNLD RQNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 2e-19 | 556 | 622 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr028771.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356203.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 15-like | ||||
TrEMBL | A0A498I8M5 | 0.0 | A0A498I8M5_MALDO; Uncharacterized protein | ||||
STRING | XP_009356203.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 1e-70 | C3H family protein |