PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028458.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family CAMTA
Protein Properties Length: 1078aa    MW: 120187 Da    PI: 5.3805
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028458.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1183.32.8e-57201362118
         CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  ++ ++rwl++ ei++iL nf+k++++ e++++p+sgsl L++rk++ryfrkDG++w+kk+dgktv+E+hekLKvg+v+vl+cyYah+e++++fqrrcy
  Pbr028458.1  20 VEAQHRWLRPAEICEILSNFHKFHISPEPPNKPPSGSLYLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHEKLKVGSVDVLHCYYAHGEDDENFQRRCY 117
                  5669********************************************************************************************** PP

         CG-1 100 wlLeeelekivlvhylevk 118
                  wlLe++l +iv+vhyl+vk
  Pbr028458.1 118 WLLEQDLMHIVFVHYLQVK 136
                  ****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.9415141IPR005559CG-1 DNA-binding domain
SMARTSM010763.2E-8018136IPR005559CG-1 DNA-binding domain
PfamPF038593.1E-5021134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.8E-5481571IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.11E-16485570IPR014756Immunoglobulin E-set
SuperFamilySSF484032.95E-16664780IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.12673790IPR020683Ankyrin repeat-containing domain
CDDcd002047.56E-13673778No hitNo description
Gene3DG3DSA:1.25.40.207.3E-17673784IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.514718751IPR002110Ankyrin repeat
SMARTSM002480.0039718748IPR002110Ankyrin repeat
PfamPF000237.5E-4718750IPR002110Ankyrin repeat
SMARTSM000151.1893915IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078894923IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.06E-7894944IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0045896914IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0071916938IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.212917941IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4919938IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1078 aa     Download sequence    Send to blast
MAERGSDAQG SRLDFRQLLV EAQHRWLRPA EICEILSNFH KFHISPEPPN KPPSGSLYLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHEK LKVGSVDVLH CYYAHGEDDE NFQRRCYWLL  120
EQDLMHIVFV HYLQVKGHRA NAGGIIENDE VAPDLKKGSP WTSSPSNSNG RTPSGYTDYA  180
SPSSTLTSAC EDVDSGDSHQ VSSLFDSVFE SPKMGNGPLM DNAELDPSLH PSLNNYDGQS  240
SIHGVYRPQF ENDQHRFSAD SIGVIDCQKT LGAGSWEEIL EQCTTGFHTG TSHASMSTTQ  300
IGSGEVPVEQ QTLGNSFLKE EFGSSMPFQT NWQLPLGDNS LQLPECSLDQ SMNLQRTLEA  360
NLRNTPDLVS AHLNQRNEQL VQDDLQAQLT NAESECLIIS SSEHDVSKDG NVNYAFTLRQ  420
QLLDREEGLK KVDSFSRWVS KELEEVDDLQ MQSSSGIPWS TAECGDVVDD SSLSPSISQD  480
QLFSIVDFSP KWAYTDSEIE VLVFGTFLIS QKEVTKYSWS CMFGEVEVPA QVLASGVLFC  540
FAPPHSAGQV PFYVTCSNRL ACSEVREFKY QVGSTKGLDM TDIGDGAAHE MHLHLRLESL  600
LSLRPLSPSG QLFGGVKENR NLISKIISLQ EEEDYLHAAE PTAVNYLLQN EGMEHLIKLM  660
KEKLYTWLLY KAIEDGKGPS VLDAEGQGVL HLAAALGYDW AIKPTVTAGV SINFRDVNGW  720
TALHWAAFYG RQEHTVAVLL SLGADPGALT DPSPEVPLGR TPADLASVSS HKGISGFLAE  780
SSLTTYLKSL TMNDAKEDGA AEISGTKVVK TFSERIATPV SYGDMPDALS LKDSLTAITN  840
ATQAADRIQQ MFRMQSFERK RLTEYDSDEF GVPDERAISF ITSKSHKGPV NGNAHTAAVQ  900
IQKKFRGWKK RKEFLIIRQR IVKIQAHVRG HQVRKQYKAI TWSVGILEKV ILRWRRKGTG  960
LRGFRPDAVA KIPDPQPVAS SEDDYDFLKK GRKQTEERLQ KALTRVKSMV QYPEGRAQYR  1020
RLLNVVEGFR ETKVNDMAVE VSEEKAEGSD EKAEGGDDLI DIDKLLDDDT FMSIAFD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028458.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337877.10.0PREDICTED: calmodulin-binding transcription activator 2 isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A498J0550.0A0A498J055_MALDO; Uncharacterized protein
STRINGXP_009337876.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]