PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr028309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 711aa MW: 78480.1 Da PI: 6.8095 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.5e-20 | 26 | 81 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le +++++++p++++r +L+++lgL rq+k+WFqNrR+++k Pbr028309.1 26 KKRYHRHTTHQIQRLEGMYKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMK 81 688999***********************************************998 PP | |||||||
2 | START | 190.1 | 1.1e-59 | 225 | 449 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEEC CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdetlakaetlevis 86 +a a++el+++ + +ep+W+kss + +n +++ ++f+++++ ++ea+r+sgvv+m+ lv ++d ++ + + + a t+evis Pbr028309.1 225 IAANAMKELLSLLQTNEPLWMKSStdgrDVLNLETYERIFPRANShlknpnVRIEASRDSGVVIMNGLALVDMFMDPNKfgeLFPTIVSMARTIEVIS 322 67889***********************9*************999******9**************************67767777777********* PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 sg g lqlm++elq+lsplvp R+f+f+Ry++q ++g w+ivdvS d +q+++ s R+++lpSg+li++++ng+skvtwvehv+ ++++p Pbr028309.1 323 SGmlgshsGSLQLMYNELQVLSPLVPtREFYFLRYCQQIEQGLWIIVDVSYDFPQDNQ-FTSQCRSHRLPSGCLIQDMPNGYSKVTWVEHVEIEDKVP 419 *********************************************************9.79999********************************** PP .HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 178 .hwllrslvksglaegaktwvatlqrqcek 206 h ++r l++sgla+ga +w+a+lqr ce+ Pbr028309.1 420 tHRIYRDLIHSGLAFGAERWLAALQRMCER 449 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.59E-20 | 12 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 15 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.378 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-18 | 24 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.50E-18 | 25 | 84 | No hit | No description |
Pfam | PF00046 | 1.1E-17 | 26 | 81 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 58 | 81 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 51.483 | 215 | 452 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.5E-41 | 216 | 450 | No hit | No description |
CDD | cd08875 | 2.67E-119 | 219 | 448 | No hit | No description |
SMART | SM00234 | 1.6E-50 | 224 | 449 | IPR002913 | START domain |
Pfam | PF01852 | 1.7E-50 | 225 | 449 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.6E-9 | 292 | 447 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.87E-24 | 470 | 702 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MEYGSGGGGS GCGDHHDEAS GSQKRKKRYH RHTTHQIQRL EGMYKECPHP DEKQRMQLSR 60 ELGLAPRQIK FWFQNRRTQM KAQNERADNS ALRAENDKIR CENIAIREAL KNVICPSCGV 120 PPLNEDSYFD EHKLRMENAQ LKEELDRVSS IAAKYIGRPI SQLSPVQPIH ISSLDLSMAS 180 FVGHGMAGPS LDLDLLPGSA SSSMPNLPCQ PNGFSDMDKS LMTDIAANAM KELLSLLQTN 240 EPLWMKSSTD GRDVLNLETY ERIFPRANSH LKNPNVRIEA SRDSGVVIMN GLALVDMFMD 300 PNKFGELFPT IVSMARTIEV ISSGMLGSHS GSLQLMYNEL QVLSPLVPTR EFYFLRYCQQ 360 IEQGLWIIVD VSYDFPQDNQ FTSQCRSHRL PSGCLIQDMP NGYSKVTWVE HVEIEDKVPT 420 HRIYRDLIHS GLAFGAERWL AALQRMCERF ACLMVSGTST RDLEGVIPSP EGKRSMMKLA 480 QRMVNNFCAS ISASNRHRWT TLSGTNEIGV RVTIHKITDP GQPNGVVLSA ATTIWLPLSP 540 QNVFNFFKDE RTRPQWDVLS NGNAVQDVAH IANGSHPGNC ISVLRAFNTS QNNMLILQQS 600 CIDSSGSLVV YSPVDLPAIN IAMSGEDPSY IPLLPSGFSI SPDGRADQGD CASSSSCNAT 660 GSGSLITVAF QILVSSLPAT KLNLESVNTV NTLIGNTVQQ IKTALNCNSS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr028309.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LM999991 | 4e-81 | LM999991.1 Malus baccata partial hdg11 gene for putative homeobox-leucine zipper protein HDG11-like, exons 1-2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009355964.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11 isoform X1 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A498JNT0 | 0.0 | A0A498JNT0_MALDO; Uncharacterized protein | ||||
STRING | XP_009355964.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |