PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028308.1
Common NameMYBR
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 462aa    MW: 50257.6 Da    PI: 7.1781
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028308.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.9e-175498147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
      Pbr028308.1 54 RAKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 98
                     569*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1748104IPR009057Homeodomain-like
PROSITE profilePS5129421.60449103IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-951101IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-1652101IPR006447Myb domain, plants
SMARTSM007174.8E-1353101IPR001005SANT/Myb domain
PfamPF002491.3E-145497IPR001005SANT/Myb domain
CDDcd001672.33E-115699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAVEDKIEAT GSNASVAVGN CSSNGDAQSH AEICSFGSDH APKVRKPYTI TKQRAKWTEE  60
EHQKFLEALK LYGRGWRQIE EHVGTKTAVQ IRSHAQKFFS KVSKESCGPS EGSIRPIEIP  120
PPRPKRKPVH PYPRKSVDCL NGTPERSPSP QFSAQGKDQQ SPPSVLSAQG SDVLGSAALD  180
QHNRSSTPTS CTTDMRSTGP SHFEKENDCM AFSSSAEEVQ GSSPSVQLSA DSVLENFPSV  240
NYRSGSKHTV STEEDAGHSG ASASIKLFGR TVLVPDSEKQ SPTGAEDSKT PTSKVEQDNC  300
ERENDKLVQT PRSDAIDTSL TLGGIVGNLD PSACGAITDW EHQKHSPNPE APLPWWAMYH  360
GLPYFHIRSC NQNSAQIQIR VDSCADKTIK QTERSFGSAV ESLGEKHIES VSSLREETRS  420
APCSSRKGFV PYKRCLADLS KNSSVIVSED MRDRQRARVC S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0016710.0KM001671.1 Pyrus x bretschneideri transcription factor MYBR (MYBR) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289226.10.0protein REVEILLE 7-like
TrEMBLA0A088PYJ90.0A0A088PYJ9_9ROSA; Transcription factor MYBR
STRINGXP_009355963.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.16e-50MYB_related family protein