PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr028206.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WRKY | ||||||||
Protein Properties | Length: 198aa MW: 22242.7 Da PI: 9.3335 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 48.8 | 1.4e-15 | 128 | 175 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk++ +p +vkk+v+r ++d+++v++tYeg Hnh+ Pbr028206.1 128 LDDGFRWRKYGQKAVKNTLCP-----------SVKKQVQRLSKDTSIVVTTYEGVHNHP 175 59***************9988...........69************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-18 | 114 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-16 | 120 | 176 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.306 | 123 | 177 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-20 | 128 | 176 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-11 | 129 | 175 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MENQYYPSPA AATSSSSPTY QFPPQNNLFT PSSSSLSINL FDNPHPPPYP HHHQVQIPPD 60 IDWISLLSGD QPAGDLLTTH NNHDQAGDRA EEIRGSNRRK GGASSRNYTR RSSRPRVAFH 120 TRSTDDILDD GFRWRKYGQK AVKNTLCPSV KKQVQRLSKD TSIVVTTYEG VHNHPSEELM 180 ETLSPLLKQM QFLSARF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-15 | 116 | 174 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr028206.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009337617.1 | 1e-121 | PREDICTED: probable WRKY transcription factor 24 | ||||
Swissprot | Q9FFS3 | 1e-38 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | A0A498KPF7 | 1e-109 | A0A498KPF7_MALDO; Uncharacterized protein | ||||
STRING | XP_009337617.1 | 1e-121 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3227 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 2e-41 | WRKY DNA-binding protein 24 |