PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr028164.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NF-YC

Protein Properties

Length: 599aa MW: 66363.2 Da PI: 3.494

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr028164.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	38.7	2.2e-12	407	486	18	96
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdiv 96 + e+P r+k+i+k d d+++i +ea l+s + +lf+ l+ rs a e kr+ +k + av+r + dfl+d+ Pbr028164.1 407 RPEFPNGRVKRIMKLDRDINKINSEALLLVSCSAQLFLEFLAERSAEVATERKRKVVKLEHMRVAVKRHRpTCDFLIDEL 486 5689************************************************************9975489***75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.01E-15	404	487	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.1E-16	407	473	IPR009072	Histone-fold
Pfam	PF00808	1.2E-16	409	472	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MAEEEIAARE EENPAGEEEN PAQEGEENPV PEGEENPVPE GEENPVPEEE ENPAQEEENP 60 VPGEEEENPA GEQEEENPVP EGEENPVPEE EENPAQEEEN PVPGEEEENP AGEQEEENPV 120 PEGEENPVPE EEENPAQEEE NPVPGEEEEN PAGEQEEENP VPEGEENPVP EEEENPAQEE 180 ENPVPGEEEE NPAGEQEEEN PVPEGEENPV PEEEENPAQE EENPVPGEEE ENPAGEQEEE 240 NPVPEGEENP VPEEEENPAQ EEENPVPGEE EENPAGEQEE ENPVPEGEEN PVPEEEENPA 300 QEEENPVPGE EEENPAGEQE EENPVPEGEE NPVPEEEENP AQEEENPVPG EEEENPAGEQ 360 EEENPVPEGE ENPVPEEEEE NPAREKEKAA KGKGKAVAEE WNANRIRPEF PNGRVKRIMK 420 LDRDINKINS EALLLVSCSA QLFLEFLAER SAEVATERKR KVVKLEHMRV AVKRHRPTCD 480 FLIDELTVPS QPSDHPATDR SQGRSVVSSS APAKRDRSRT AADRPAPAGT RRIDGFFHKL 540 AKKSPIQTEE APIEIDEASI ETDDAPIEVD DVPIESDEAS IENEEPLIEA HEAPIEIN*

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MAEEEIAARE EENPAGEEEN PAQEGEENPV PEGEENPVPE GEENPVPEEE ENPAQEEENP  60
VPGEEEENPA GEQEEENPVP EGEENPVPEE EENPAQEEEN PVPGEEEENP AGEQEEENPV  120
PEGEENPVPE EEENPAQEEE NPVPGEEEEN PAGEQEEENP VPEGEENPVP EEEENPAQEE  180
ENPVPGEEEE NPAGEQEEEN PVPEGEENPV PEEEENPAQE EENPVPGEEE ENPAGEQEEE  240
NPVPEGEENP VPEEEENPAQ EEENPVPGEE EENPAGEQEE ENPVPEGEEN PVPEEEENPA  300
QEEENPVPGE EEENPAGEQE EENPVPEGEE NPVPEEEENP AQEEENPVPG EEEENPAGEQ  360
EEENPVPEGE ENPVPEEEEE NPAREKEKAA KGKGKAVAEE WNANRIRPEF PNGRVKRIMK  420
LDRDINKINS EALLLVSCSA QLFLEFLAER SAEVATERKR KVVKLEHMRV AVKRHRPTCD  480
FLIDELTVPS QPSDHPATDR SQGRSVVSSS APAKRDRSRT AADRPAPAGT RRIDGFFHKL  540
AKKSPIQTEE APIEIDEASI ETDDAPIEVD DVPIESDEAS IENEEPLIEA HEAPIEIN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr028164.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11105	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	2e-41	nuclear factor Y, subunit C13