PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr027585.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 364aa MW: 42818.8 Da PI: 4.5244

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr027585.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.1	5.6e-14	121	206	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++ v L+e+ ++ +l+r++l+ +W ev+ k+ ++ ++er+ +qCk+ ++ l+++ykk+ke +++ +ss+++yf+++e Pbr027585.1 121 EWTEHAVFMLLEVWGDRFLQLGRKSLRSDDWNEVAYKVsEASKIERTETQCKSMLDMLKRKYKKEKEKMEEM-GLNSSKWAYFKKME 206 5***********************************677899**********************96.89999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.6E-18	120	207	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MDDMEDDPRY HPKSYSASHH NSSGRRKIHT RNNQYSRPVP NRYAEDDDDE LDDFDEGNGR 60 EDQYNDEEDE HRHGFNRNFD ADEDFERHPK KRKVKNLESR YEFAPRVRLP NREPGFRAEE 120 EWTEHAVFML LEVWGDRFLQ LGRKSLRSDD WNEVAYKVSE ASKIERTETQ CKSMLDMLKR 180 KYKKEKEKME EMGLNSSKWA YFKKMEMLMA SSSRQETGLA CGVDSGEYVF MNTRVYLEQS 240 NGFDEMRDSP GESETDDDGD ENGNDDFDVF PPRMAGMRGE DGDEGSSYRV LADSIHKFGE 300 IYEKIESSKR QQMRELEKMR KNFNKELELQ KKQILERAQV EIAKIQEADD DDETDVSVDD 360 LSE*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MDDMEDDPRY HPKSYSASHH NSSGRRKIHT RNNQYSRPVP NRYAEDDDDE LDDFDEGNGR  60
EDQYNDEEDE HRHGFNRNFD ADEDFERHPK KRKVKNLESR YEFAPRVRLP NREPGFRAEE  120
EWTEHAVFML LEVWGDRFLQ LGRKSLRSDD WNEVAYKVSE ASKIERTETQ CKSMLDMLKR  180
KYKKEKEKME EMGLNSSKWA YFKKMEMLMA SSSRQETGLA CGVDSGEYVF MNTRVYLEQS  240
NGFDEMRDSP GESETDDDGD ENGNDDFDVF PPRMAGMRGE DGDEGSSYRV LADSIHKFGE  300
IYEKIESSKR QQMRELEKMR KNFNKELELQ KKQILERAQV EIAKIQEADD DDETDVSVDD  360
LSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	186	KRKYKKEKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr027585.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009336922.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A498KEU2	0.0	A0A498KEU2_MALDO; Uncharacterized protein
STRING	XP_009336922.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	9e-81	Trihelix family protein