PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027539.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 351aa    MW: 38011.8 Da    PI: 10.2493
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027539.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix476.5e-1571158186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +Liea   +  +l+rg+lk+++W+ev++++      +++ ++ +qCk++++ ++k+yk +k   + +  +  s++p++++l+
  Pbr027539.1  71 CWSEGATAVLIEAWGGRYLELSRGNLKQKHWKEVADVVssreDYGKIPKTDIQCKNRIDTVKKKYKLEKSKIGAG--GGPSKWPFYERLD 158
                  7*************************************8766667789999******************999997..67779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-2569160No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEEDDEILSP ASGGSQSQTS QRQNGRITVT VAVPPAQIPA PTPSQNKTLT LALPSSGKQQ  60
GRSSGGGRED CWSEGATAVL IEAWGGRYLE LSRGNLKQKH WKEVADVVSS REDYGKIPKT  120
DIQCKNRIDT VKKKYKLEKS KIGAGGGPSK WPFYERLDHL IGPSGAKVGP GSGGGGSGSG  180
EFSGHSQKMP VGVRHSQFLG HRAKREGKIR QKDLVEWDSD ESRELSPFSI DNEVFERKRR  240
RTANANASVG KGVGGGLKPC AVGREKEGGG GGWGSSMREL TRAILKFGEA YEHAETAKLQ  300
QVVEMEKQRM KFAKELELQR LQFFMKTQVE ISQLKTGSGR KSGVNGGREC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236240RKRRR
2236241RKRRRT
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027539.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150422e-47AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336719.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG83e-57ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A498J4V50.0A0A498J4V5_MALDO; Uncharacterized protein
STRINGXP_009336719.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-50sequence-specific DNA binding transcription factors