PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr027398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29367 Da PI: 7.8606 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.6 | 1.5e-10 | 67 | 114 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ e+Er+RR+++N+ f+ Lr+llP++ + ++ a++ ++ Y+++Lq Pbr027398.1 67 QSNFEAERKRRNKLNDVFHILRTLLPNN-----TGMDRASVIGDTIAYVSKLQ 114 5789***********************9.....67999999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.421 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-14 | 67 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-8 | 68 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-13 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.34E-9 | 71 | 118 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-12 | 71 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.009 | 181 | 258 | IPR002912 | ACT domain |
SuperFamily | SSF55021 | 6.59E-5 | 181 | 257 | No hit | No description |
CDD | cd04873 | 3.22E-4 | 182 | 246 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDLYPCFICF LVSSFVLVAF FLLTCAGKRG GMNMMMTLPS LRQMRGSLVR LKSWKLSEDQ 60 RNEKVPQSNF EAERKRRNKL NDVFHILRTL LPNNTGMDRA SVIGDTIAYV SKLQRQVKEL 120 AGELELNSNG GAKETSYICG NNGNLQSEFL RQMETIIANT PENEKMEPQV EVTELDVNEF 180 SVTVLCEHKP GGFVRLMEAL DTLGLEVTYA NVTSFKTLIF NVFKVQKNDS TGKIVQADHV 240 KDSLLEITRK LSMESIIRVA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr027398.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009355696.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
Swissprot | Q9ZVX2 | 2e-48 | AMS_ARATH; Transcription factor ABORTED MICROSPORES | ||||
TrEMBL | A0A498JQF2 | 1e-170 | A0A498JQF2_MALDO; Uncharacterized protein | ||||
STRING | XP_009355696.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4225 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 8e-51 | bHLH family protein |